Locus 4997

Sequence ID 3L_DroMel_CAF1
Location 13,754,600 – 13,754,693
Length 93
Max. P 0.981980
window7897

overview

Window 7

Location 13,754,600 – 13,754,693
Length 93
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 97.85
Mean single sequence MFE -22.97
Consensus MFE -22.19
Energy contribution -21.97
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.90
Structure conservation index 0.97
SVM decision value 1.90
SVM RNA-class probability 0.981980
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13754600 93 + 23771897
AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA
..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ ( -22.60)
>DroSim_CAF1 173595 93 + 1
AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA
..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ ( -22.60)
>DroYak_CAF1 172582 92 + 1
AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCAUCCGA-AAGGUGUGCUAUAAAAUCAA
..............((((((((...(((.((((...)))).))).......))))))))..(((((((((..-..)).)))))))........ ( -23.70)
>consensus
AACACAAAUUUUUGCUUUUUUCUAUGCCGAAACAAAGUUUGGGUGAAUAAUGAAAAGAGGAGUGGCACCCAAAAAGGUGUGCUAUAAAAUCAA
..............((((((((...(((.((((...)))).))).......))))))))..(((((((((.....)).)))))))........ (-22.19 = -21.97 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:04 2006