Locus 4994

Sequence ID 3L_DroMel_CAF1
Location 13,751,861 – 13,751,952
Length 91
Max. P 0.999242
window7889

overview

Window 9

Location 13,751,861 – 13,751,952
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 96.26
Mean single sequence MFE -33.14
Consensus MFE -28.80
Energy contribution -29.44
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -2.99
Structure conservation index 0.87
SVM decision value 3.46
SVM RNA-class probability 0.999242
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13751861 91 + 23771897
AUUUUCUGUGACUAAUCUGGCCAGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU
..............(((.((((.(((((((.(((((((((((((.......))))))))))))).))))).)).....)))).)))..... ( -31.80)
>DroSec_CAF1 158599 91 + 1
AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU
..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... ( -34.40)
>DroSim_CAF1 170836 91 + 1
AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU
..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... ( -34.40)
>DroEre_CAF1 165454 91 + 1
AUUUUCUGUGACUAAUUUGGCUCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGCUGACCCGAUGGGCUUGAUAUUGU
....((...(.((...((((.(((((.....(((((((((((((.......)))))))))))))..))))).))))..)))..))...... ( -29.40)
>DroYak_CAF1 169796 91 + 1
AUUUUCUGUGACUAAUUGGGCUCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGCUGACCCGAUGCACUUGAUAUUGU
....((.(((....((((((.(((((.....(((((((((((((.......)))))))))))))..))))))))))).)))..))...... ( -35.70)
>consensus
AUUUUCUGUGACUAAUCUGGCCCGGCAAUUGCUGCAGUUGCAUGUGCAGCUUGUGCGAUUGCAGAAGUUGACCCGAUGGGCUUGAUAUUGU
..............(((.((((((((((((.(((((((((((((.......))))))))))))).))))).))....))))).)))..... (-28.80 = -29.44 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:57 2006