Locus 4980

Sequence ID 3L_DroMel_CAF1
Location 13,741,723 – 13,741,814
Length 91
Max. P 0.552064
window7861

overview

Window 1

Location 13,741,723 – 13,741,814
Length 91
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -11.49
Consensus MFE -7.22
Energy contribution -7.66
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.44
Structure conservation index 0.63
SVM decision value 0.04
SVM RNA-class probability 0.552064
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13741723 91 + 23771897
AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU-----------
.....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84)
>DroPse_CAF1 148137 94 + 1
----UCUGAAGCUGCUGC-----CCGCUCUUGGCUUUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGCAUUUCCUUUCCCCUGCACAUCCCUC
----...((.(.((((((-----(.((.....))...)))).......((((..(((((((.......))))))))))).............)))).)).... ( -13.00)
>DroSec_CAF1 148515 91 + 1
AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU-----------
.....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84)
>DroSim_CAF1 159649 91 + 1
AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU-----------
.....(((.......)))....((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.84)
>DroEre_CAF1 155141 91 + 1
AUUCCGUAAACCCCCCACAUCUGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU-CUUUUUGCCU-----------
......................((.((.....)))).(((((.......(((..(((((((.......))))))))))...-....))))).----------- ( -10.44)
>DroPer_CAF1 149654 94 + 1
----UCUGAAGCUGCUGC-----CCGCUCUUGGCUUUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGCAUUUCCUUUCCCCUGCACAUCCCUC
----...((.(.((((((-----(.((.....))...)))).......((((..(((((((.......))))))))))).............)))).)).... ( -13.00)
>consensus
AUUCCGUAAACCCCCUACAUCCGACGCUCUUAGCUCUGGCAAUUUAUUUGCAAAUAUUUUUCAACAUCAAAAAUAUGUUUU_CUUUUUGCCU___________
.........................((.....))...(((((.......(((..(((((((.......))))))))))........)))))............ ( -7.22 =  -7.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:30 2006