Locus 4976

Sequence ID 3L_DroMel_CAF1
Location 13,736,883 – 13,736,991
Length 108
Max. P 0.631225
window7856

overview

Window 6

Location 13,736,883 – 13,736,991
Length 108
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 85.30
Mean single sequence MFE -30.42
Consensus MFE -18.62
Energy contribution -20.12
Covariance contribution 1.50
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.61
SVM decision value 0.20
SVM RNA-class probability 0.631225
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13736883 108 + 23771897
UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGGAAAAAAACGAG-----AAAAACGA----GAGCAGCCAGAGC-CGGGCUGAACUGAA
...........((((....((((((.....(((((....)))))..(((((....))))).......))))))-----...))))(----(..(((((.....-..)))))..))... ( -24.20)
>DroPse_CAF1 138201 116 + 1
UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUGUUCAGAGCAGCUGCAAAAAUGCAGGAAA--AACCGAGAGGAGAAAUAGGAGCAGGAGCAGCCGGAGCGCUGUCUGAGCGGAG
..(((.(((((((........)).))))))))((((((((((.((((((((....))))((...--..((....))..........((....))..)).....)))))))))))))). ( -32.40)
>DroYak_CAF1 154476 107 + 1
UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGCAAA-AAACGAG-----AAAAAUGA----GAGCAGCCCAAAC-CGGGCUGAGCUCAA
...........((((....(((((......(((((....)))))..(((((....))))))))))-.))))..-----.....(((----(..((((((....-.))))))..)))). ( -32.70)
>DroPer_CAF1 139505 116 + 1
UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUGUUCAGAGCAGCUGCAAAAAUGCAGGAAA--AACCGAGAGGAGAAAUAGGAGCAGGAGCAGCCGGAGCGCUGUCUGAGCGGAG
..(((.(((((((........)).))))))))((((((((((.((((((((....))))((...--..((....))..........((....))..)).....)))))))))))))). ( -32.40)
>consensus
UGGCUAUAAUACGUUAUAAUUUGUUAUUGAGUUCUCUUCAGAGCAGCUGCAAAAAUGCAGGAAA__AAACGAG_____AAAAAGGA____GAGCAGCCGGAGC_CGGGCUGAGCGGAA
..(((......((((...............(((((....)))))..(((((....))))).......))))......................(((((((....)))))))))).... (-18.62 = -20.12 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:25 2006