Locus 4965

Sequence ID 3L_DroMel_CAF1
Location 13,720,257 – 13,720,360
Length 103
Max. P 0.916015
window7835

overview

Window 5

Location 13,720,257 – 13,720,360
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.62
Mean single sequence MFE -31.04
Consensus MFE -25.10
Energy contribution -24.86
Covariance contribution -0.24
Combinations/Pair 1.12
Mean z-score -1.87
Structure conservation index 0.81
SVM decision value 1.11
SVM RNA-class probability 0.916015
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13720257 103 + 23771897
GCACAUGCGGCGUAUACUUAAUGCGCGAAAUGGCGGCGCUGGCGGUGCUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU
.....((((((((((.....))))))(((..((((.(((..(((((((.....)))))))....)))))))...)))...................))))... ( -34.20)
>DroSec_CAF1 127245 103 + 1
GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUACUGUCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU
.....(((((.((((.......(((((.....((((((((((((....)))))))))))).....)))))((((...........))))))))..)))))... ( -33.70)
>DroSim_CAF1 138030 103 + 1
GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUACUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU
.....(((((.((((.......(((((.....(((((((((.((....)).))))))))).....)))))((((...........))))))))..)))))... ( -31.80)
>DroEre_CAF1 133886 94 + 1
GCACACGCGGCGUAUACUUAAUGCGCGAAACGGCGG---------UGCUGGCUGCGCCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU
((.((((((((((((.....))))))......((((---------(((.....)))))))...)))))).........((((.....))))......)).... ( -29.00)
>DroYak_CAF1 137778 97 + 1
GCACACGCGGCGUAUACUUAACGCGCGAAACGGCGGU------GGUGCUGGCAGUGCCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUGCGCAAAU
(((..((((.(((.......)))))))..((((((.(------(.......)).))))))...)))((((.........................)))).... ( -26.51)
>consensus
GCACAUGCGGCGUAUACUUAAUGCGCGAAACGGCGGUGCUGGCGGUGCUGGCGGUACCGUAUAUGCGUGCUUAAUUCAAUUUUAUUUAAAUACUUUCGCAAAU
......(((((((((((......(((......)))........(((((.....)))))))))))))(((.((((...........)))).)))...))).... (-25.10 = -24.86 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:38:05 2006