Locus 4955

Sequence ID 3L_DroMel_CAF1
Location 13,707,546 – 13,707,658
Length 112
Max. P 0.602977
window7823

overview

Window 3

Location 13,707,546 – 13,707,658
Length 112
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 96.96
Mean single sequence MFE -20.04
Consensus MFE -17.58
Energy contribution -18.02
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.33
Structure conservation index 0.88
SVM decision value 0.14
SVM RNA-class probability 0.602977
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13707546 112 + 23771897
UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUCCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU
...........(((((((.((((((((...(((........)))......)))))))).........(((((......(((((...))))).......)))))..))))))) ( -20.32)
>DroSec_CAF1 114588 112 + 1
UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU
...........(((((((.((((((((.....((.((....)))).....)))))))).........(((((......(((((...))))).......)))))..))))))) ( -21.42)
>DroSim_CAF1 125481 112 + 1
UUUUAGUAAUAGGCCUUUCUAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU
...........((((((((((((((((.....((.((....)))).....)))))))...)))))..(((((......(((((...))))).......))))).....)))) ( -17.12)
>DroEre_CAF1 121034 112 + 1
UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCCCGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU
...........(((((((.((((((((.....((.((....)))).....)))))))).........(((((......(((((...))))).......)))))..))))))) ( -21.42)
>DroYak_CAF1 124524 112 + 1
UUUUAGUAAUAGGCCCUUCGAUUUUAAACACUCCAUCGAACGGGAUUAAAUUAAAAUCAGAGAAAAUAUGACGAGCACGGACUACGACUCCCAACAAAGUCAUUCAAAGGCU
...........((((((..((((((((....(((........))).....))))))))..)).....(((((......(((.......))).......))))).....)))) ( -19.92)
>consensus
UUUUAGUAAUAGGCCUUUCGAUUUUAAACACUUCAUCGAACGAGAUUAAAUUAAAAUCACAGAAAAUAUGACGAGCACGGAAUACGAUUCCCAACAAAGUCAUUCAAAGGCU
...........(((((((.((((((((........((....)).......)))))))).........(((((......(((((...))))).......)))))..))))))) (-17.58 = -18.02 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:53 2006