Locus 4939

Sequence ID 3L_DroMel_CAF1
Location 13,695,967 – 13,696,058
Length 91
Max. P 0.568210
window7800

overview

Window 0

Location 13,695,967 – 13,696,058
Length 91
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 82.54
Mean single sequence MFE -32.36
Consensus MFE -21.00
Energy contribution -21.17
Covariance contribution 0.17
Combinations/Pair 1.22
Mean z-score -1.82
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.568210
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13695967 91 + 23771897
--GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----CUGAUGCCCA
--(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -33.80)
>DroSec_CAF1 103307 91 + 1
--GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----UUGAUGCUCA
--...---------..(((((((((((.((..(((..-----..))).)).)))))...))))))..((((.(((((((((.........))))).)-----))).)))).. ( -28.40)
>DroSim_CAF1 113733 91 + 1
--GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG-----CUGAUGCCCA
--(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -33.80)
>DroEre_CAF1 109325 91 + 1
--GGG---------UCUUGCUGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCAGCAAAUGGUAACAACAUUCGACGGGCAAACGAAUGG-----CUCAUGCCCA
--(((---------(..((..((((((..((((((((-----((((........(((((......))))).......)))))).))))))...))))-----)))).)))). ( -30.26)
>DroYak_CAF1 112691 93 + 1
CUGGG---------UCUUGCCGGCCAUGUUUUGUCGU-----CGGACUAAGAUGGCUAUCGGCAAAUGGUAACAACAUUCGACGGGUGAACGGAUGG-----CUGAUGCCCA
..(((---------(......((((((.((..(((..-----..))).)).))))))((((((...((....)).((((((.........)))))))-----))))))))). ( -30.70)
>DroPer_CAF1 94406 112 + 1
AUGGGACUUUGGUUUCUCCCAGGCCAUGUUUUGUUGUGUUGCCUGGCAUUGAUGGCUAUCAGUAAAUGGCAACAACAUUCGAAUGGCAGCUGGAAGGAGGCCCUCAUUAUCA
(((((.....(((((((.(((((((((....((((((..((((....((((((....))))))....)))))))))).....)))))..))))..))))))))))))..... ( -37.20)
>consensus
__GGG_________UCUUGCUGGCCAUGUUUUGUCGU_____CGGACUAAGAUGGCUAUCAGCAAAUGGCAACAACAUUCGACGGGUAAACGGAUGG_____CUGAUGCCCA
..(((...........(((((((((((.((..(((.........))).)).)))))...)))))).((....)).((((((.........))))))............))). (-21.00 = -21.17 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:31 2006