Locus 4930

Sequence ID 3L_DroMel_CAF1
Location 13,683,115 – 13,683,235
Length 120
Max. P 0.627924
window7788

overview

Window 8

Location 13,683,115 – 13,683,235
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.44
Mean single sequence MFE -28.83
Consensus MFE -25.96
Energy contribution -25.68
Covariance contribution -0.28
Combinations/Pair 1.12
Mean z-score -1.16
Structure conservation index 0.90
SVM decision value 0.19
SVM RNA-class probability 0.627924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13683115 120 + 23771897
CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -26.80)
>DroPse_CAF1 78829 120 + 1
CUUGCAUUUCUUGCUGCGGCUAGCAAAAACUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))(((((((((((((....))))))).((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -28.30)
>DroEre_CAF1 95828 120 + 1
CUUGCAUUUCUUGCUGCGGCCAGCGGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUCUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))((((((..((((...(((((((((((.((..((.....))..)).))).)))))))).....))))....((((((....))))))...))))))........... ( -32.40)
>DroYak_CAF1 99493 120 + 1
CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -26.80)
>DroAna_CAF1 147056 119 + 1
CUUGCAUUUCUUGCUGUGGCCAGCAGAAAGUUCUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUGCAGA-UUUAAAGCCACAAAAGUCAACUU
...(((.....)))((((((.((((((....))))))..((((((((((.(((.((((....))))...(((.....))).......))).)))))-))))).))))))........... ( -30.40)
>DroPer_CAF1 80045 120 + 1
CUUGCAUUUCUUGCUGCGGCUAGCAAAAACUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))(((((((((((((....))))))).((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... ( -28.30)
>consensus
CUUGCAUUUCUUGCUGCGGCCAGCAGAAAGUUUUGUUAAUUGAGUUUGUUGAAAGUUUUAUUAAACAGAGCGACAGCCGCAUUCAAGUUUUCCAGAAUUUAAAGCCGCAAAAGUCGACUU
...(((.....)))((((((.((((((....))))))..((((((((...((((((((....))))...(((.....)))........))))..)))))))).))))))........... (-25.96 = -25.68 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:37:20 2006