Locus 4914

Sequence ID 3L_DroMel_CAF1
Location 13,668,621 – 13,668,717
Length 96
Max. P 0.598046
window7757

overview

Window 7

Location 13,668,621 – 13,668,717
Length 96
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 83.01
Mean single sequence MFE -33.42
Consensus MFE -21.31
Energy contribution -21.62
Covariance contribution 0.31
Combinations/Pair 1.14
Mean z-score -1.76
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.598046
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13668621 96 - 23771897
--GACCGGCU--GAAUAUGCUGCUCGGAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGA----------CAA
--..(((((.--......))).((((......))))..))(((((((((((((.....(((((.(((((...))).)).))))).))))))))))))----------).. ( -30.90)
>DroSec_CAF1 76014 96 - 1
--GACCGGCU--GAAUAUGCUGCUCGGAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGG----------CAG
--((.((((.--......)))).)).........((((((((..(((((..(((....))).....)))))))))))))...((((((....)))))----------).. ( -33.20)
>DroEre_CAF1 81158 95 - 1
GAGACCGGCU--GAAUAUGCUCCUCGAAGUGAUGAGUUGGGUGCUGCUUCUAGCUCUAGCUUUUAGGAGCAACUCAUUUAAAGCCCCGGGAGCGGG-------------A
......((((--((((.(((((((.(((((...((((((((.......))))))))..))))).)))))))....))))..))))(((....))).-------------. ( -36.00)
>DroYak_CAF1 84409 108 - 1
--GACCGGCGGAGAAUAUGCUUCUCGAAGUGAUGAGAUGGAGCCUGUUUCUAGCUCUAGCUUUUAAGAGCAGCUCAUUUAAAGCCCGAGCAGCAGGAGCAACUGCAGCAA
--..(.(((.(((((.....))))).....((((((.((((((.........))))))((((....))))..))))))....))).).((.((((......)))).)).. ( -33.60)
>consensus
__GACCGGCU__GAAUAUGCUGCUCGAAGUGAUGAGAUGGGUUCUGCUUCUAGCUCUAGCUUUUAAGAGCAACUCAUUUAAAGCCCUGGGAGCAGGA__________CAA
....(((((.........))).((((......))))..))..(((((((((((.....(((((...(((...)))....))))).))))))))))).............. (-21.31 = -21.62 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:50 2006