Locus 4911

Sequence ID 3L_DroMel_CAF1
Location 13,662,575 – 13,662,677
Length 102
Max. P 0.570180
window7750

overview

Window 0

Location 13,662,575 – 13,662,677
Length 102
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 74.92
Mean single sequence MFE -28.30
Consensus MFE -10.94
Energy contribution -12.72
Covariance contribution 1.78
Combinations/Pair 1.23
Mean z-score -2.04
Structure conservation index 0.39
SVM decision value 0.07
SVM RNA-class probability 0.570180
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13662575 102 + 23771897
GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCUAA---------GAAGAG---CAAAGUUCUUCCUUUUCCGAC----GGACCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA
(((..((....))..)))...(((((((((((((...---------((((((---(...)))))))....(((...----))).......))))))).))))))..-............ ( -27.80)
>DroSec_CAF1 70022 102 + 1
GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCGAA---------CAAGAG---CAAAGUUCUUCCUUUUCCGAC----GGAUCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA
(((..((....))..)))...((((((((((((((((---------.(((((---(...)))))).....(((...----)))....)))))))))).))))))..-............ ( -27.00)
>DroSim_CAF1 80317 102 + 1
GCAUCAAUGAUUUAUUACACACUUUUAGGCAGCCGAA---------CAAGAG---CAAUGUUCUUCCUUUUCCGAC----GGAUCCUUUUGGCUGCCUUAAAAGCC-UAGGCCCUUCAA
.......(((...........((((((((((((((((---------.(((((---(...)))))).....(((...----)))....)))))))))).))))))..-........))). ( -25.50)
>DroEre_CAF1 75159 102 + 1
GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCAGAA---------CAAGAG---CCAACUUCUUCCUUUGCCGAC----AGGUCCUUUUGGCUGCCUUAAAAGCC-UAGGCUCUUCAA
(((..((....))..))).........(((((..(((---------.(((..---....))).)))..)))))((.----((..(((...((((........))))-.)))..)))).. ( -24.00)
>DroYak_CAF1 78353 87 + 1
GCAUCAAUGAUUUAUUGC---------------AGAA---------CAAGCG---CAAACUUCUUCCUUUUGCAAU----GCCUUCUUUUGGCUGCCUUAAAAGCC-UAGGCUCUUCCA
.............(((((---------------((((---------.(((..---....))).)))....))))))----((((......((((........))))-.))))....... ( -16.80)
>DroAna_CAF1 113057 119 + 1
GCAUCAAUGAUUUAUUGCAAACUUUUAGGCAGCCAGGCUCUUCCAGCCAGGCCAGAGGAGCUCUGCCUGCCUAGGCGUCUGGUUCGGUUCGGAUGCCUUGAGAGCCCUGGGCCUUACAC
(((..((....))..))).......(((((((.((((((((((..((...))..))))))).))).)))))))(((((((((......))))))))).((((.(((...)))))))... ( -48.70)
>consensus
GCAUCAAUGAUUUAUUGCACACUUUUAGGCAGCCGAA_________CAAGAG___CAAAGUUCUUCCUUUUCCGAC____GGAUCCUUUUGGCUGCCUUAAAAGCC_UAGGCCCUUCAA
(((..((....))..)))........(((((((((((..........(((((........)))))......((.......)).....))))))))))).....(((...)))....... (-10.94 = -12.72 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:44 2006