Locus 4891

Sequence ID 3L_DroMel_CAF1
Location 13,629,562 – 13,629,658
Length 96
Max. P 0.823056
window7720

overview

Window 0

Location 13,629,562 – 13,629,658
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 95.07
Mean single sequence MFE -22.71
Consensus MFE -21.32
Energy contribution -21.68
Covariance contribution 0.36
Combinations/Pair 1.04
Mean z-score -1.09
Structure conservation index 0.94
SVM decision value 0.69
SVM RNA-class probability 0.823056
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13629562 96 - 23771897
UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG
....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85)
>DroSec_CAF1 37044 96 - 1
UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG
....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85)
>DroSim_CAF1 46853 96 - 1
UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG
....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85)
>DroEre_CAF1 39340 96 - 1
CUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAUCCAAAUUAGUGGCAAAUUCAG
.(((.((((((((((((((((.(((((.((....................)).))))).))).))))))))).........)))).)))....... ( -19.25)
>DroYak_CAF1 43893 96 - 1
CUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG
....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... ( -23.85)
>DroAna_CAF1 73178 96 - 1
GUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGAGAUGUACAGGCCAAAUUAGUGGGGGUGGCGG
(((((.((.((....((((((....(((((((...........)))))))..))))))...)).)).)))))..((((..((....))..)))).. ( -21.60)
>consensus
UUGCGGCUGGUAUUUUGUCGUUUGUUAAAAGUUUUCAACACUCAUUUUUAUUAUGACAUACGCGCGAAGUACGAGCCAAAUUAGUGGCAAAUUCAG
....((((.((((((((((((.(((((.((....................)).))))).))).))))))))).))))................... (-21.32 = -21.68 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:15 2006