| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,621,137 – 13,621,248 |
| Length | 111 |
| Max. P | 0.918956 |
| Location | 13,621,137 – 13,621,248 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.64 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -20.35 |
| Energy contribution | -19.66 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918956 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13621137 111 - 23771897 -------AUAACGCUCUAGCUUUGUUUGCCUUUGACACACCC--ACAAAACCAAACUAAGACACCGUGUCACAGGACACGUGGCAGCAUUUUGAGUAGCAACAUCAAGUUGCUUAUUAAA -------.....((((((((((.(((((..((((........--.))))..))))).))).)..((((((....))))))))).)))..(((((..((((((.....))))))..))))) ( -27.40) >DroPse_CAF1 10910 119 - 1 CAUUUCAUUGACGAAAUCGCUCUGUUUGCCCUGGCCACACACUGGCAAC-ACUCUCUCAAAGACCGUGUCCGGGGCCACGUGCUAGCAUUUUAAGCGGCAGCAGCAAAUUGCUUAUUAAA .(((((......))))).((((((((((((((((.(((....((....)-).(((.....)))..))).)))))))...(((....)))...)))))).)))(((.....)))....... ( -32.10) >DroSec_CAF1 28057 109 - 1 ---------AACGCUCUCGCUUUGUUUGCCUUUGACACACCC--ACAAAACCAAACUAAGACACCGUGUCACAGGACACGUGGCAGCAUUUUGAGUAGCAACAUCAAGUUGCUUAUUAAA ---------...(((.((((...(((((..((((........--.))))..))))).........(((((....))))))))).)))..(((((..((((((.....))))))..))))) ( -26.90) >DroEre_CAF1 30821 109 - 1 ---------AAGCAUCUAGCUUUGUUUGCCUUUGACACACCC--ACAAACCCAAACUAAGACACCGUGUCACAGGACACGUGGCAGCAUUUUGAGUAGCAACAUCAAGUUGCUUAUUAAA ---------..((......(((.(((((..((((........--.))))..))))).))).(((.(((((....))))))))...))..(((((..((((((.....))))))..))))) ( -26.20) >DroYak_CAF1 35164 112 - 1 ------AAAAACGGUCUAGCUUUGUUUGUCUUUGACACACCC--ACAAACCCAAACUAAGACACCGUGUCACAGGACACGUGGCAGCAUUUUGAGUAGCAACAUCAAGUUGCUUAUUAAA ------....(((((....(((.(((((..((((........--.))))..))))).)))..)))))(((((.......))))).....(((((..((((((.....))))))..))))) ( -27.50) >DroPer_CAF1 10972 119 - 1 UAUUUCAUUGACGAAAUCGCUUUGUUUGCCCUGGCCACACACUGGCAAC-ACUCUCUCAAAGACCGUGUCCGGGGCCACGUGCUAGCAUUUUAAGCGGCAGCAGCAAAUUGCUUAUUAAA .(((((......)))))(((((((((.(((.(((((.....((((..((-((..((.....))..))))))))))))).).)).))))....)))))..(((((....)))))....... ( -30.10) >consensus ________UAACGAUCUAGCUUUGUUUGCCUUUGACACACCC__ACAAA_CCAAACUAAGACACCGUGUCACAGGACACGUGGCAGCAUUUUGAGUAGCAACAUCAAGUUGCUUAUUAAA ..................((((((..(((((.((((((...........................)))))).))).))..))).)))..(((((..((((((.....))))))..))))) (-20.35 = -19.66 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:36:09 2006