Locus 4880

Sequence ID 3L_DroMel_CAF1
Location 13,617,054 – 13,617,166
Length 112
Max. P 0.762729
window7704

overview

Window 4

Location 13,617,054 – 13,617,166
Length 112
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.26
Mean single sequence MFE -25.10
Consensus MFE -23.33
Energy contribution -22.75
Covariance contribution -0.58
Combinations/Pair 1.09
Mean z-score -1.13
Structure conservation index 0.93
SVM decision value 0.51
SVM RNA-class probability 0.762729
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13617054 112 - 23771897
-------GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
-------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90)
>DroPse_CAF1 6838 120 - 1
GGUUGGGUGGGAGUUAAAUUAAAUUUACAUAAUUUAUGACUUACUCAGCAGUGUUCCAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
.((((((((((...(((((((........)))))))...))))))))))...(((.....))).((((((((((......((((((....)))))).))))))))))............. ( -26.40)
>DroSec_CAF1 24026 112 - 1
-------GUGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
-------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90)
>DroYak_CAF1 31215 112 - 1
-------GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
-------.....(((((......)))))((((((((....((((...((((((((-....))))))))((((((......((((((....)))))).))))))))))....)))))))). ( -25.90)
>DroAna_CAF1 60408 111 - 1
--------GGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU-CAUGGGUGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
--------....(((((......)))))((((((((....((((...((((..((-....))..))))((((((......((((((....)))))).))))))))))....)))))))). ( -22.70)
>DroPer_CAF1 6779 120 - 1
GGUUGGUUGGGAGUUAAAUUAAAUUUACAUAAUUUAUGACUUACUCAGCAGUGUUCCAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
..((((((........)))))).....(((((((((....((((...((((((((.....))))))))((((((......((((((....)))))).))))))))))....))))))))) ( -23.80)
>consensus
_______GGGGCGUAAAAUUAAAUUUACAUAAUUUAUGACUUGCUCAGCAAUGUU_CAUGGGCGUUGUGUUGCAUAAUUUUAGGCAUUUUUGUUUAUUGCGGCGUAAAAUUUGAAUUAUG
...........................(((((((((....((((...((((((((.....))))))))((((((......((((((....)))))).))))))))))....))))))))) (-23.33 = -22.75 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:59 2006