Locus 4868

Sequence ID 3L_DroMel_CAF1
Location 13,607,074 – 13,607,172
Length 98
Max. P 0.995159
window7686

overview

Window 6

Location 13,607,074 – 13,607,172
Length 98
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 90.18
Mean single sequence MFE -24.76
Consensus MFE -22.94
Energy contribution -23.14
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.93
SVM decision value 2.55
SVM RNA-class probability 0.995159
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13607074 98 + 23771897
CCC-----UGCCCCCGCUUCACCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC
...-----.......((((((.................(((((((.((((....)))).))))).)).((((((...))))))........))))).)..... ( -24.70)
>DroSec_CAF1 14259 99 + 1
CCCA----UGCCCCCGCUUCUCCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC
....----...............((((.......((((....)))).....))))(((((........((((((...))))))..((....))..)))))... ( -23.70)
>DroSim_CAF1 23232 99 + 1
CCCA----UGCCCCCGCUUCUCUGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC
...(----(((....((......)).........((((....)))).))))....(((((........((((((...))))))..((....))..)))))... ( -24.20)
>DroEre_CAF1 16861 103 + 1
CCCGCCUCCGUCUCCGCUGCGCCAUAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCUUUGGCCAAAACAAAAAUGAAGACACCCC
.........((((.(((.((((............((((....)))).((....)))))).))......((((((...)))))).........).))))..... ( -26.20)
>DroYak_CAF1 21064 98 + 1
GCCGCCAC-----CCGCUUCAACACAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC
........-----..((((((.................(((((((.((((....)))).))))).)).((((((...))))))........))))).)..... ( -25.00)
>consensus
CCCA____UGCCCCCGCUUCACCGCAAUAUCAUCACACGAAAGUGUCGCGUUUGCGUGUCGCUUAUCAUUGGCCCUUGGCCAAAACAAAAAUGAAGACACCCC
...............(((((..................(((((((.((((....)))).))))).)).((((((...)))))).........)))).)..... (-22.94 = -23.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:42 2006