Locus 4866

Sequence ID 3L_DroMel_CAF1
Location 13,605,773 – 13,605,864
Length 91
Max. P 0.981502
window7681

overview

Window 1

Location 13,605,773 – 13,605,864
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 96.24
Mean single sequence MFE -17.80
Consensus MFE -15.24
Energy contribution -15.24
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.86
SVM decision value 1.89
SVM RNA-class probability 0.981502
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13605773 91 + 23771897
CCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72)
>DroSec_CAF1 12665 91 + 1
UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72)
>DroSim_CAF1 21945 91 + 1
UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.(((......))))))))..))))........... ( -18.72)
>DroEre_CAF1 15572 86 + 1
UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAA-----UGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.-----.......)))))..))))........... ( -16.42)
>DroYak_CAF1 19740 86 + 1
UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAA-----UGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.-----.......)))))..))))........... ( -16.42)
>consensus
UCCUAACAACAUUUCAUAUUAAGGCAGCAGCUAUAAAAAUUAACGAGCUGCAAGUAAUGUAAUGUAGCAUACUUUCUGCCAUCAAAUGCGC
......................((((((((((.............))))))(((((.............)))))..))))........... (-15.24 = -15.24 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:37 2006