| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,602,624 – 13,602,741 |
| Length | 117 |
| Max. P | 0.710630 |
| Location | 13,602,624 – 13,602,741 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.24 |
| Mean single sequence MFE | -17.36 |
| Consensus MFE | -13.70 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.710630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13602624 117 - 23771897 AAUACUGAAUGGUGCCCCUU-UUAAUACACCCCAU--AUCCAUUAAUCAUUUAUUUAUUAAUGGCCAAACUCAUCUUCACUUUCAUUCGAUUACGAUUUCGACAUUUUCCAGGAGCACAA ...........((((.(((.-..............--..((((((((.(.....).))))))))......................((((........))))........))).)))).. ( -17.70) >DroSec_CAF1 9536 118 - 1 AAUACUGAAUGGUGCCCCUUUUUAAUAUACCUCAU--AUCCAUUAAUCAUUUAUUUAUUAAUGGCCAAACUCAUCUUCACUUUCAUUCGAUUACGUUUUCGACAUUUUCCAGGAGGACAA .(((.((((.((....))..)))).))).((((..--..((((((((.(.....).))))))))......................((((........))))..........)))).... ( -15.50) >DroSim_CAF1 18778 118 - 1 AAUACUGAAUGGUGCCCCUUUUUAAUAUACCCCAU--AUCCAUUAAUCAUUUAUUUAUUAAUGGCCAAACUCAUCUUCACUUUCAUUCGAUUACGUUUUCGACAUUUUCCAGGAGCACCA .........((((((.(((................--..((((((((.(.....).))))))))......................((((........))))........))).)))))) ( -21.20) >DroEre_CAF1 12347 116 - 1 AAUACUGAAGGGUGCCCGU--UUAAUACAACCCAU--AUCCAUUAAUCAUUUAUUUAUUAAUGGCCCGACUCAUCUUCACUUUCAUUCGAUUACGUUUUCGACAUUUACCAGCAGCACAA ....(((...((((.....--..............--..((((((((.(.....).))))))))......................((((........))))....))))..)))..... ( -15.00) >DroYak_CAF1 15761 118 - 1 AAUACUGAAGGGUGCCCGU--UUAAUACACCCCAUAUAUCCAUUAAUCAUUUAUUUAUUAAUGGCCCAACUCAUCUUCACUUUCAUUCGAUUACGUUCUCGACAUUUUCCAGGAGCACAA .....(((((((((.....--......))))).......((((((((.(.....).)))))))).................)))).........((((..(........)..)))).... ( -17.40) >consensus AAUACUGAAUGGUGCCCCUU_UUAAUACACCCCAU__AUCCAUUAAUCAUUUAUUUAUUAAUGGCCAAACUCAUCUUCACUUUCAUUCGAUUACGUUUUCGACAUUUUCCAGGAGCACAA ...........((((((......................((((((((.(.....).))))))))......................((((........)))).........)).)))).. (-13.70 = -14.10 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:33 2006