Locus 4852

Sequence ID 3L_DroMel_CAF1
Location 13,593,096 – 13,593,201
Length 105
Max. P 0.786814
window7653

overview

Window 3

Location 13,593,096 – 13,593,201
Length 105
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.13
Mean single sequence MFE -26.86
Consensus MFE -21.12
Energy contribution -20.96
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.80
Structure conservation index 0.79
SVM decision value 0.57
SVM RNA-class probability 0.786814
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13593096 105 + 23771897
--------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC
--------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00)
>DroSim_CAF1 9320 105 + 1
--------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC
--------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00)
>DroEre_CAF1 967 105 + 1
--------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCCGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC
--------------....-.....((((.............((((....((((((((((.......)))))))))))))).((((((....)))))).............))))...... ( -27.80)
>DroYak_CAF1 5901 105 + 1
--------------CGGC-AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC
--------------....-.....((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..)))......))))...... ( -25.00)
>DroAna_CAF1 36116 117 + 1
CAGAGGCCAGAGGACGGCGGAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCCAUCGCCGAGGUCGUGGGAUCGAGGGG---UCGAAGGGCGAC
.....(((....(((((((((....))).....................((((((((((.......)))))))))))))....((..((((....))))..)).)---))....)))... ( -31.50)
>consensus
______________CGGC_AAAAACUCCAAAUGAAAAUAAACCGCAACAUUUUUCAUUUGUAUAGAAAAUGAAGAAGCGGACUCGGGAGCACUGGAGCUGAGGGACAAUAGGAGGAGGAC
........................((((.............((((....((((((((((.......)))))))))))))).(((...(((......)))..))).........))))... (-21.12 = -20.96 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:35:10 2006