Locus 4836

Sequence ID 3L_DroMel_CAF1
Location 13,564,559 – 13,564,663
Length 104
Max. P 0.942502
window7626

overview

Window 6

Location 13,564,559 – 13,564,663
Length 104
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.82
Mean single sequence MFE -37.72
Consensus MFE -22.95
Energy contribution -23.03
Covariance contribution 0.09
Combinations/Pair 1.22
Mean z-score -1.95
Structure conservation index 0.61
SVM decision value 1.33
SVM RNA-class probability 0.942502
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13564559 104 - 23771897
GGUGUGUGGUGUGGGGG---CAGGGAGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCC-
(((.....(((((((((---((((((.(..((......))..).)).)))))))).)))))...(((((..((((.(((((.....))))).))))..)))))))).- ( -42.50)
>DroPse_CAF1 53607 90 - 1
GCGGA---------GAG---CAUAGAGCGGAGUGACUGC------UGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUGCCAACCUUC
((((.---------(.(---((...(((((.....))))------)...)))))))).........(((..((((.(((((.....))))).))))..)))....... ( -29.90)
>DroSim_CAF1 32284 91 - 1
GGUAUG-----------------GAGGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCCC
.(((((-----------------..((((.((((((.......)))).)).)))).)))))...(((((..((((.(((((.....))))).))))..)))))..... ( -34.50)
>DroEre_CAF1 46884 108 - 1
GGUGUGGGGUGUGGGGUGGGGGGUGGAGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGAGCCCC
.....(((((((((((..((((((.(((((.....))))).)).)).))..))))))........((((..((((.(((((.....))))).))))..)))).))))) ( -46.60)
>DroYak_CAF1 48559 100 - 1
GGCGGG--------GGAAGGGGGGGGGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGUGCCCC
...(((--------(...(.((((.(((.((.((.(....).)))).))).)))).).......(((((..((((.(((((.....))))).))))..))))).)))) ( -42.90)
>DroPer_CAF1 53444 90 - 1
GCGGA---------GAG---CAUAGAGCGGAGUGACUGC------UGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUGCCAACCUUC
((((.---------(.(---((...(((((.....))))------)...)))))))).........(((..((((.(((((.....))))).))))..)))....... ( -29.90)
>consensus
GGUGUG________GGG___CAGGGAGGGGAGUGGCUUUUGGCGUCGCCUGCCCCGCAUGCAUUGCGGUUUCUGUUGCAUAAUUAUUAUGUUGCGGUUACUGAGCCCC
(((.......................((((.(((((.......)))))...))))(((.....)))(((..((((.(((((.....))))).))))..)))..))).. (-22.95 = -23.03 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:45 2006