| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,558,858 – 13,558,967 |
| Length | 109 |
| Max. P | 0.795153 |
| Location | 13,558,858 – 13,558,967 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 91.89 |
| Mean single sequence MFE | -35.83 |
| Consensus MFE | -28.23 |
| Energy contribution | -29.19 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13558858 109 + 23771897 GUAAGGACCUUCCACACCGCGCA-AAAACAUGCAGCAGUCGG--GGAAUCGAAAAGUGCGUAGUGUGGCCGGAAUAAAAAGGGGCUUAUACCACAUGUAAGCCGGUGCUUGA .((((.(((..((((((..((((-......))).(((.((((--....))))....))))..))))))((..........))((((((((.....))))))))))).)))). ( -37.10) >DroSec_CAF1 40508 110 + 1 GUAAGGACCUUCCACACCGCGAA-AAAACAUGCAGCAGUCGGGGGGAAUCGAAAAGUGCGUAGUGUGGCCGGAAUAA-AAGGGGCUUAUACCACAUGUAAGCCGGUGCUUGA .((((.(((..((((((..((..-....)..(((....((((......))))....))))..))))))((.......-..))((((((((.....))))))))))).)))). ( -33.50) >DroSim_CAF1 26628 109 + 1 GUAAGGACCUUCCACACCGCGCA-AAAACAUGCAGCAGUCGGG-GGAAUCGAAAAGUGCGUAGUGUGGCCGGAAUAA-AAGGGGCUUAUACCACAUGUAAGCCGGUGCUCGA ...((.(((..((((((..((((-......))).(((.((((.-....))))....))))..))))))((.......-..))((((((((.....))))))))))).))... ( -34.70) >DroEre_CAF1 41165 107 + 1 GUAAGGACCUUCCAC--CGCCUGCAGAGCAGCCGGCAGUCGG--GGCAUCGAAAAGUGCGUAGUGUGGCGGGAAUAA-AAGGGGCUUAUGCCACAUGUAAGCCGGUGCUUGA .((((.(((((((.(--(((((((.......(((.....)))--.((((......)))))))).)))).))))....-....(((((((.......)))))))))).)))). ( -39.60) >DroYak_CAF1 42707 106 + 1 GUAAGGACCUUCCAC--CGCGCA-AAAACAUCCAGCAGUCGG--GGAAUCGAAAAGUGCGUAGUGUGGCGGGAAUAA-AAAGGGCUUAUACCACAUGUAAGCCGGUGCUUGA .((((.(((((((.(--(((((.-..........(((.((((--....))))....)))...)))))).))))....-....((((((((.....))))))))))).)))). ( -34.24) >consensus GUAAGGACCUUCCACACCGCGCA_AAAACAUGCAGCAGUCGG__GGAAUCGAAAAGUGCGUAGUGUGGCCGGAAUAA_AAGGGGCUUAUACCACAUGUAAGCCGGUGCUUGA .((((.(((..((((((.(((((...............((((......))))....))))).))))))..............((((((((.....))))))))))).)))). (-28.23 = -29.19 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:38 2006