| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,558,462 – 13,558,561 |
| Length | 99 |
| Max. P | 0.593111 |
| Location | 13,558,462 – 13,558,561 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.56 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.77 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.593111 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13558462 99 + 23771897 CGCGCGUGUG----UGUAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUCGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- .(((.((((.----((((((((((......))))))))))...........(((.(((--------((((...((.....))..))))))).))).-....)))))).)...---- ( -20.80) >DroGri_CAF1 57234 108 + 1 GACAUAUGUGC-AGCGCAUUUAAAUAAAAUUGUAAGUGCAAUUAAAAAACAUUUUUGCCAUCGCACAAGAAUCGCUCGGUGCUCUCUACCAUGCAAAGCCAAUAUGGAG------- ..(((((.(((-((((((((((.(......).)))))))...........(((((((........))))))).))..((((.....)))).))))......)))))...------- ( -20.40) >DroSec_CAF1 40109 97 + 1 -----AUGUGA-GGGGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUUGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- -----(((..(-((((((((((((......))))))))).................((--------(((......)))))...))))..)))....-...............---- ( -23.20) >DroYak_CAF1 42293 102 + 1 CGUGUGUAUGA-GGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCCUCGUGCACUCUUGCAUGAAA-AUCAACAUCGACAUC---- .(.((((((((-((.(((((((((......)))))))))...(((((.....))))).--------........)))))))))).)(((.((....-)))))..........---- ( -24.70) >DroAna_CAF1 42508 96 + 1 ------UGUGU-GGGGCAUUUAAAUAAAAUUUUAAGUGCAAUUUAAAAACAUUUUCGC--------AAGAAUCUCUCCGGGCACUCUUGCAUGAAA-AUUAACAUUGGCAUG---- ------.((((-.(((((((((((......)))))))))...........((((((((--------((((..((.....))...))))))..))))-)).....)).)))).---- ( -21.60) >DroPer_CAF1 46646 107 + 1 UGUGUGUGUGUGGGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC--------AAGAAUCGCUUCGUGCACUCUAGCAUGAAA-AUCAACAUGGACAUAGGGG (((((.(((((..(((((((((((......)))))))))...................--------.........(((((((......))))))).-.)).))))).))))).... ( -27.20) >consensus _G_GUGUGUGA_GGAGCAUUUAAAUAAAAUUUUAAGUGCAAUUAAAAAACAUUUUUGC________AAGAAUCGCCUCGUGCACUCUUGCAUGAAA_AUCAACAUCGACAUC____ .....((((......(((((((((......))))))))).....................................((((((......)))))).......))))........... (-11.96 = -12.77 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:37 2006