Locus 4825

Sequence ID 3L_DroMel_CAF1
Location 13,541,512 – 13,541,605
Length 93
Max. P 0.618254
window7609

overview

Window 9

Location 13,541,512 – 13,541,605
Length 93
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.12
Mean single sequence MFE -19.65
Consensus MFE -12.76
Energy contribution -13.28
Covariance contribution 0.53
Combinations/Pair 1.05
Mean z-score -1.83
Structure conservation index 0.65
SVM decision value 0.17
SVM RNA-class probability 0.618254
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13541512 93 + 23771897
UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCG----
............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70)
>DroSec_CAF1 28709 93 + 1
UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA----
............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70)
>DroSim_CAF1 14791 93 + 1
UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUAGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA----
............((..((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...((.....)).)).---- ( -21.70)
>DroEre_CAF1 29104 93 + 1
UUUUCUUCGUCUAACAGCUUACAACGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCUCGAAAACCGCUCCC----
.....((((.......(((((....(((((((....(((((.((-((....)))).)))))))))))).....)))))..))))..........---- ( -19.40)
>DroYak_CAF1 30758 80 + 1
UUUUCUUCGUCAGACAGCUUAUACCGCAUUAGACUUGCAAUGGC-AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCUC-----------------
................((((((...(((((((....(((((.((-((....)))).))))))))))))....))))))...----------------- ( -19.80)
>DroPer_CAF1 32942 91 + 1
UCUUCUUUAUU--GAAGCUUAGAACGCAUUUGACGUGCAACGGGAAAAUAUUUGUAAUUGCCUAAUGCCUCAAUAAUCCCAAAUUCCC-----AGACC
......(((((--((.((((((...((((.....)))).(((((......)))))......)))).)).)))))))............-----..... ( -13.60)
>consensus
UUUUCUUCGUCAGGCAGCUUAUACCGCAUUAGACUUGCAAUGGC_AAAUAUUUGUAAUUGCCUGAUGCCUCAAUAAGCCACGCAUCCCGCUCCA____
................((((((...(((((((.(.(((((...........)))))...).)))))))....)))))).................... (-12.76 = -13.28 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:30 2006