Locus 4812

Sequence ID 3L_DroMel_CAF1
Location 13,481,161 – 13,481,272
Length 111
Max. P 0.528344
window7585

overview

Window 5

Location 13,481,161 – 13,481,272
Length 111
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.68
Mean single sequence MFE -43.98
Consensus MFE -19.14
Energy contribution -18.31
Covariance contribution -0.83
Combinations/Pair 1.54
Mean z-score -2.10
Structure conservation index 0.44
SVM decision value -0.01
SVM RNA-class probability 0.528344
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13481161 111 + 23771897
CACCCGUGGCACACCCACGCUGGUGAGUACGCA---GCGGAAGCAGCAGUCCAGCGAAGUGUUGCAAAAUCUGUUGAACGCCAAUCGAAAGAUUG---GUGGCGGAGGCACCACAAC
.....((((.((((...((((((.....((((.---((....)).)).))))))))..))))(((....(((((....((((((((....)))))---)))))))).)))))))... ( -46.40)
>DroPse_CAF1 21965 114 + 1
AACGCGCGGCACGCCCACACUGGUGACUGCCCA---GCGGAAGCAGCAGUCCAGUGAGGUGCUGCAGAACCUGCUGGGUGUCAACCGAAAGAUCGUAGGAGGCGGUGGCACCACCAC
...((((((((...((.((((((..(((((...---((....)).))))))))))).))))))))....(((((..(((....)))((....)))))))..))((((....)))).. ( -51.10)
>DroEre_CAF1 19583 111 + 1
CACCCGCGGAACACCCACGCUGGUGAGUACGCA---GCGGAAACAGCAGUCCAGCGAGGUGUUGCAAAAUCUGUUGAACGCCAAUCGAAAGAUUG---GUGGUGGAGGCACCACAAC
...(((((.((((((..((((((((....))).---(((....).))....))))).)))))).).............((((((((....)))))---)))))))............ ( -44.20)
>DroWil_CAF1 27295 114 + 1
GACUAGAGGGACACCCACUCUGGUGACGGCGCAGCAGCGUAAACAGCAAUCCAGUGAAGUUUUGCAGAAUCUUCUGAAUGCCAAUCGUAAGAUUG---GUGGCGGAGCAACAACAAC
.(((((((((....)).)))))))....((((....)))).....((((..(......)..))))......(((((...(((((((....)))))---))..))))).......... ( -36.20)
>DroAna_CAF1 19957 111 + 1
CACCCGAGGCACCCCCACGCUAGUUAGUGCUCA---ACGGAAGCAGCAGUCUAGCGAGGUGCUGCAGAACCUGCUGAACGCUAACCGCAAGAUUG---UCGGGGGAGGAGGUACCAC
...........(((((((....(((((((.(((---.(((..((((((.(((....))))))))).....))).))).)))))))(....)...)---).))))).((.....)).. ( -36.90)
>DroPer_CAF1 25881 114 + 1
AACGCGCGGUACGCCCACACUGGUGACUGCCCA---GCGGAAGCAGCAGUCCAGUGAGGUGCUGCAGAACCUGCUGGGUGUCAACCGAAAGAUCGUAGGAGGCGGUGGCACCACCAC
...((((((((...((.((((((..(((((...---((....)).))))))))))).))))))))....(((((..(((....)))((....)))))))..))((((....)))).. ( -49.10)
>consensus
CACCCGCGGCACACCCACGCUGGUGACUGCGCA___GCGGAAGCAGCAGUCCAGCGAGGUGCUGCAGAACCUGCUGAACGCCAACCGAAAGAUUG___GUGGCGGAGGCACCACAAC
.....(((((((.....((((((....(((...............)))..))))))..)))))))......((((...((((..................))))..))))....... (-19.14 = -18.31 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:34:03 2006