Locus 4801

Sequence ID 3L_DroMel_CAF1
Location 13,430,498 – 13,430,618
Length 120
Max. P 0.997071
window7566

overview

Window 6

Location 13,430,498 – 13,430,618
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.67
Mean single sequence MFE -44.96
Consensus MFE -42.16
Energy contribution -42.48
Covariance contribution 0.32
Combinations/Pair 1.14
Mean z-score -1.84
Structure conservation index 0.94
SVM decision value 2.79
SVM RNA-class probability 0.997071
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13430498 120 - 23771897
AGAUUACAGCUCUUGAUCCUUCCUCUGGCGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC
........(((((..(((((((((((((((((.((((...(((((((((......(((....))).))))))))).)))).)))........))))))))).))))...)..)))))... ( -48.80)
>DroSec_CAF1 27665 120 - 1
AGAUUACAGCUCUUGACCCUUCCUCUGGAGCGGAACUAGACCAUAAGCUGUCCCAAGCCGAUGCUGAGUUUGUAGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC
........(((((..(((((((((((((.(((((..(((..(((..(((......)))..))))))..))))).....((((....))))...)))))))).))))...)..)))))... ( -40.80)
>DroSim_CAF1 29533 120 - 1
AGAUUACAGCUCUUGACCCUUCCUCUGGAGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC
........(((((..(((((((((((((.(((.((((...(((((((((......(((....))).))))))))).)))).))).((....)))))))))).))))...)..)))))... ( -48.50)
>DroEre_CAF1 28699 120 - 1
AGAUUACAGCCCUUGAUCCUUCCUCCGGCGAAGAACUGGACCACAAGCUAUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGCGGAGAGGGCACUUGGGAGCGAC
........(((((((.(((((((.((((((...((((...(((((((((......(((....))).))))))))).))))((....))...)))))).))).))))))...))).))... ( -41.90)
>DroYak_CAF1 27913 120 - 1
AGAUAACAGCCCUUGAUCCUUCCUCUGGCAAAGAUCUAGACCACAAGCUAUCCCAGGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCAAC
........(((((((.((((((((((((((..........(((((((((......(((....))).)))))))))...((((....)))).)))))))))).))))))...))).))... ( -44.80)
>consensus
AGAUUACAGCUCUUGAUCCUUCCUCUGGCGCGGAACUAGACCACAAGCUGUCCCAAGCCGAUGCUGAGUUUGUGGAGGUUGUGCACACAAAUGCCGGAGGAGAGGGCACUUGGGAGCGAC
........(((((..(((((((((((((((..........(((((((((......(((....))).)))))))))...((((....)))).)))))))))).))))...)..)))))... (-42.16 = -42.48 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006