Locus 4792

Sequence ID 3L_DroMel_CAF1
Location 13,426,130 – 13,426,238
Length 108
Max. P 0.556517
window7546

overview

Window 6

Location 13,426,130 – 13,426,238
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.63
Mean single sequence MFE -44.40
Consensus MFE -39.02
Energy contribution -39.02
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.88
SVM decision value 0.05
SVM RNA-class probability 0.556517
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13426130 108 - 23771897
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGCUGGCAUGCAGCGAAUGCAAGU------------GCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.(((((((((....)))..(((((..(((((.(((((((.....))))..)------------)).)))))......((((.((((((...))).))))))))))))))))))))). ( -43.10)
>DroSec_CAF1 23148 108 - 1
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGCUGGCAUGCAGCGAAUGCAACU------------GCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.(((((((((....)))..(((((..(((((.(((((((.....))))..)------------)).)))))......((((.((((((...))).))))))))))))))))))))). ( -43.10)
>DroSim_CAF1 24929 108 - 1
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGCUGGCAUGCAGCGAAUGCAACU------------GCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.(((((((((....)))..(((((..(((((.(((((((.....))))..)------------)).)))))......((((.((((((...))).))))))))))))))))))))). ( -43.10)
>DroEre_CAF1 24316 120 - 1
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGAUGGCAUGCAGCGACUGCAACUGCGACUGCAACUGCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.((((((..((........))(((.((((.((((.(((((((.(.......))).))))).(((((..(((....)))..))))).)))))))))))..........))))))))). ( -46.70)
>DroYak_CAF1 23457 114 - 1
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGCUGGCAUGCAGCGAAUGCAACUGCGAG------UGCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.(((((((((....)))..(((((.((((((.(((((((.....))))..))).))------))))...((....))((((.((((((...))).))))))))))))))))))))). ( -46.00)
>consensus
GCGCAGCCUCUGUCGCCACAAAGAAGUACGCGCUGGCAUGCAGCGAAUGCAACU____________GCGAGUGCAACUGCGAGUGCAGCGCCACGCGACUGACUCAUUUCGGGGCUUGCC
(((.((((((..((........))(((.((((.((((.((((.....))))...............(((..(((....)))..)))...)))))))))))..........))))))))). (-39.02 = -39.02 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:25 2006