Locus 475

Sequence ID 3L_DroMel_CAF1
Location 1,345,159 – 1,345,264
Length 105
Max. P 0.643498
window705

overview

Window 5

Location 1,345,159 – 1,345,264
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 66.56
Mean single sequence MFE -21.30
Consensus MFE -9.24
Energy contribution -10.47
Covariance contribution 1.23
Combinations/Pair 1.25
Mean z-score -2.18
Structure conservation index 0.43
SVM decision value 0.23
SVM RNA-class probability 0.643498
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1345159 105 - 23771897
GUAGUUGACUUAGGUGAAGCAAACGCAGCUUGCACUGUGCAAACAAUCUGAAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUUGCGCUAUACAAAUACAUU
(((.(((.....((((((((.......)))).))))((((((....((..((((......))))..))..(((.......)))..))))))....))).)))... ( -24.20)
>DroSec_CAF1 817 87 - 1
AUGGUUGACUUAGUUGGAGCAAAAGCAGCUUCCACUGUGCCAACAAUCUGGAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUU------------------
...((((.(.((((.(((((.......))))).)))).).))))..((..((((......))))..))...................------------------ ( -20.70)
>DroYak_CAF1 1177 81 - 1
AUGGUUGACUGCAGAAGAGCAAAAACAGCU---ACUGCUCCAGC-UUCUUCUGUAACUUAACUUGGGAAAGUAAAGGAAAUAC--------------------UU
.........(((((((((((......(((.---...)))...))-.))))))))).(((.((((....)))).))).......--------------------.. ( -19.00)
>consensus
AUGGUUGACUUAGGUGGAGCAAAAGCAGCUU_CACUGUGCCAACAAUCUGAAGUAACUAAACUUUGGAAAGUAAAAUAAAUACCAUU________________UU
...((((.....((((((((.......)))).))))....))))..((((((((......))))))))..................................... ( -9.24 = -10.47 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:54 2006