Locus 4742

Sequence ID 3L_DroMel_CAF1
Location 13,339,350 – 13,339,440
Length 90
Max. P 0.981937
window7464

overview

Window 4

Location 13,339,350 – 13,339,440
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 96.44
Mean single sequence MFE -16.37
Consensus MFE -14.77
Energy contribution -15.27
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.90
SVM decision value 1.90
SVM RNA-class probability 0.981937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13339350 90 + 23771897
CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70)
>DroSec_CAF1 11193 90 + 1
CACGCUUCGUAGCACAACCCAUCCAGCAACAAUAACAAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..((.((............)).))...........(((.....((((((......)))))).....)))..........))).. ( -12.60)
>DroSim_CAF1 10792 90 + 1
CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70)
>DroEre_CAF1 11381 90 + 1
UACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70)
>DroYak_CAF1 11952 90 + 1
UACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. ( -16.70)
>DroAna_CAF1 10749 90 + 1
CACGCCUCGCUGCACAAACCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUGGCAUGCCUCAGCUC
...(((.(((((...........)))).......(((((........)))))(((((.....)))))......).)))............ ( -18.80)
>consensus
CACGCUUCGUUGCACAACCCAUCCAGCAACAAUAACGAAACACUUAAUUCGUCGUCGUCUAGCGACGUCAUCAGUAACAUUCCUCAGCUC
...(((..(((((............)))))...........(((.....((((((......)))))).....)))..........))).. (-14.77 = -15.27 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:02 2006