Locus 4732

Sequence ID 3L_DroMel_CAF1
Location 13,320,621 – 13,320,741
Length 120
Max. P 0.544441
window7452

overview

Window 2

Location 13,320,621 – 13,320,741
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 98.33
Mean single sequence MFE -34.73
Consensus MFE -31.69
Energy contribution -31.47
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.71
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.544441
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13320621 120 - 23771897
UGCACAGCUAAUGCGUUUUUAAUGAGUGCAUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCAGCAU
(((...(((.((((((((.....))))))))((((((.(((......))).)))))))))(((((((((((......)))........(((((.........))))))))))))).))). ( -33.90)
>DroEre_CAF1 5527 120 - 1
UGCGCAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU
.(((((.....))))).........((((((((((((.(((......))).))))))))((((((((((((......)))........(((((.........)))))))))))))))))) ( -37.10)
>DroYak_CAF1 5431 120 - 1
UGCACAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU
.((((.((....)).((......))))))((((((((.(((......))).))))))))((((((((((((......)))........(((((.........)))))))))))))).... ( -33.20)
>consensus
UGCACAGCUAAUGCGUUUUUAAUGAGUGCCUGCAUGCUAUUAUAAAAAGUUGUGUGCAGCGGAAACUUGUCACCAGAGAUUUGAGAUUUCCCAGCCGAACAAUGGGAAAGUUUCCGGCAU
((((((((....)).(((.(((((.(((....)))..))))).)))......))))))(((((((((((((......)))........(((((.........))))))))))))).)).. (-31.69 = -31.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:50 2006