Locus 4728

Sequence ID 3L_DroMel_CAF1
Location 13,316,162 – 13,316,281
Length 119
Max. P 0.774831
window7447

overview

Window 7

Location 13,316,162 – 13,316,281
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 79.04
Mean single sequence MFE -24.07
Consensus MFE -20.55
Energy contribution -20.33
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.20
Structure conservation index 0.85
SVM decision value 0.54
SVM RNA-class probability 0.774831
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13316162 119 - 23771897
GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCAACUCAACUCAACUCCUCCCGUCUCCACCAUCUAACGUCUUU
(((((((((......)))))).((((..(((((....(((((......................)))))((((...)))))))))..))))......)))................... ( -27.45)
>DroEre_CAF1 1381 96 - 1
GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGCUGUCUCAACC--ACUCAGCUCC---------------------UCUCC
(((.((((((((...)))))...((.(((.(((..(((((((.....))))))))))...))).))..))).)))......--..........---------------------..... ( -21.40)
>DroYak_CAF1 1211 92 - 1
GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCCACC--AGCCAG-------------------------UCUUU
((((((.(((((...))))).......((..((...((((((......................))))))...))..))..--.).)))-------------------------))... ( -23.35)
>consensus
GACUGCGGCGACUUAGUCGCAAAGUUUUGUUGAAUUUGUGGCUAAAAGUUAUAAUCAUAUCAGUGCCACGUUGUCUCAACC__ACUCAGCUCC_____________________UCUUU
(((.((((((((...)))))...((.(((.(((..(((((((.....))))))))))...))).))..))).)))............................................ (-20.55 = -20.33 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:45 2006