| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,308,811 – 13,308,906 |
| Length | 95 |
| Max. P | 0.561163 |
| Location | 13,308,811 – 13,308,906 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -11.81 |
| Energy contribution | -13.03 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.561163 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13308811 95 + 23771897 AGUGUUCUGCCAGAAGGA------AAGGAUG--UUUCCGCCUUU-------UCAGCUGCGAAGUAAGGCGUCUUCUUUUCCUCUUUU-UUUUUUUUUGGUGG------AAGUGCUGA (((((((..(((((((((------(((((.(--....((((((.-------...(((....))))))))).).))))))))).....-......)))))..)------)).)))).. ( -30.00) >DroSec_CAF1 70905 91 + 1 AGUGUUCUGCCAGAAGGA------AAGGAUG--UUUCCGCCUUU-------UCAGCUGCGAAGUAAGGCGUCUUCUUUUCCUCUUUU-----UUUUUGGUGG------AAGUGCUGA (((((((..(((((((((------(((((.(--....((((((.-------...(((....))))))))).).))))))))).....-----..)))))..)------)).)))).. ( -30.41) >DroSim_CAF1 71244 93 + 1 AGUGUUCUGCCAGAAGGA------AAGGAUG--UUUCCGCCUUU-------UCAGCUGCGAAGUAAGGCGUCUUCUUUUACUCUUUU-U--UUUUUUGGUGG------AAGUGCUGA (((((((..(((((((((------(((((..--..)))(((((.-------...(((....))))))))................))-)--))))))))..)------)).)))).. ( -28.70) >DroEre_CAF1 73171 100 + 1 AGUGUUCUGCCAGAAGGA------AAGCAUG--UUUCCGCCUUU-------UCAGCUGCGAAGUAAGGCGUCUUCAUUUUUUCGUU--UUCUUUUUUGGUGGAAGUGGAAGUGCUGA ....(((..(((((((((------(((((((--....((((((.-------...(((....)))))))))....)))......)))--))).)))))))..)))............. ( -27.20) >DroYak_CAF1 77326 95 + 1 AGUGUUCUGCCAGAGGGA------AAGGAUG--UUUCCGCCUUU-------UCAGCUGCGAAGUAAGGCGUCUUCUUUUUUUCGUUU-UUCUCUUUUGGUGG------AAGUGCUGA (((((((..(((((((((------(((((..--..)))(((((.-------...(((....)))))))).................)-))).)))))))..)------)).)))).. ( -30.00) >DroAna_CAF1 66587 104 + 1 AAAGCUCCAACAGGACGAGGCGGAACCAGUGCUCUUCCUUCUUUGCCAGAUUCGACUGCAAAA-----UGUCCUU--UAUUUCAUUUUUUUUUAUUUGAUGG------GAAUGUUGA .......(((((((((((((.(((........))).)))).(((((.((......))))))).-----.))))..--..(..((((...........)))).------.).))))). ( -22.60) >consensus AGUGUUCUGCCAGAAGGA______AAGGAUG__UUUCCGCCUUU_______UCAGCUGCGAAGUAAGGCGUCUUCUUUUUCUCUUUU_UU_UUUUUUGGUGG______AAGUGCUGA ......(((((((((((.........(((......)))(((((.....................)))))......................)))))))))))............... (-11.81 = -13.03 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:39 2006