Locus 4723

Sequence ID 3L_DroMel_CAF1
Location 13,306,359 – 13,306,464
Length 105
Max. P 0.921052
window7440

overview

Window 0

Location 13,306,359 – 13,306,464
Length 105
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 52.43
Mean single sequence MFE -24.27
Consensus MFE -12.91
Energy contribution -12.35
Covariance contribution -0.56
Combinations/Pair 1.54
Mean z-score -1.31
Structure conservation index 0.53
SVM decision value 1.14
SVM RNA-class probability 0.921052
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13306359 105 + 23771897
GCUCAGAGCCAAAGGGAGUUCCCAUCUCCAUCCCCAUCC-----CGGAUCUCCAUUUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU
...((((((((..(((((((...................-----.(((........))).....((....))))))))))))).......(((((....))))))))).. ( -27.00)
>DroGri_CAF1 71990 99 + 1
AUGUUAACACUGUCGGUCCACGC------GACAGCGGAU-----AUAACCAAUACCUUGAAGAUGGUACGGACUGUUUGAUCUCGAAUAUAAUCAAGUCAGGUCACUAAG
.........(((.((((((.(((------....)))...-----........((((........)))).)))))(((((....)))))........).)))......... ( -21.50)
>DroSec_CAF1 68475 99 + 1
GCUCAGAGCCAAAGGGAGUCCCC------AUCCCCAUCC-----CGGAUCUCCAUUUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU
...((((((((..((((((....------((((......-----.(((........))).....)))).....)))))))))).......(((((....))))))))).. ( -26.40)
>DroYak_CAF1 74890 104 + 1
GCUCAGAGCCAAGGGGAGUCCCCAUCCC------UAUCCCCAUCCACAUCCCUAUCUGCAUCCAGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU
...((((((((..((((((....((((.------..............................)))).....)))))))))).......(((((....))))))))).. ( -22.18)
>consensus
GCUCAGAGCCAAAGGGAGUCCCC______AUCCCCAUCC_____CGGAUCUCCAUCUCCAUCCCGGAUCCCCAACUCCCUGGCCUUUGUCCGAUGUCAGCAUUGUCUGUU
...(((((((..(((((((..........................(((........))).....((....)).)))))))))).......(((((....))))))))).. (-12.91 = -12.35 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:38 2006