Locus 4713

Sequence ID 3L_DroMel_CAF1
Location 13,286,912 – 13,287,008
Length 96
Max. P 0.576602
window7428

overview

Window 8

Location 13,286,912 – 13,287,008
Length 96
Sequences 4
Columns 111
Reading direction reverse
Mean pairwise identity 76.97
Mean single sequence MFE -21.50
Consensus MFE -13.43
Energy contribution -15.43
Covariance contribution 2.00
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.62
SVM decision value 0.09
SVM RNA-class probability 0.576602
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13286912 96 - 23771897
UGUCUUGAGGGUUUUGCCUCUUAGGGC----------CAUUUGUCAAGCAAAUUGGAAUGUUU---AGUUUAUUAGUGCUUUUUAAUACUAUUUUUUGUCUCCAAGGCU--
.((((((((((.....)).))))))))----------.........(((...((((((((...---(((.((((((......))))))..)))...))).))))).)))-- ( -20.40)
>DroSec_CAF1 48633 96 - 1
UGUCUUGGGGGUUUUGCCUCUGAGGGC----------UAUUUGUCAAGCAAAUUGGAAUUUUU---AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCUCCAAGGCC--
.(((((((((.....((((....))))----------...(((..(((((.....((((....---.)))).....)))))..))).............))))))))).-- ( -24.20)
>DroSim_CAF1 49203 96 - 1
UGUCUUGGGGGUUUUGCCUCUGAGGGC----------UAUUUGUCAAGCAAAUUGGAAUGUUU---AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCCCCAAGGCC--
.(((((((((.....((((....))))----------...(((..(((((.....((((....---.)))).....)))))..))).............))))))))).-- ( -27.40)
>DroEre_CAF1 49513 106 - 1
AAUCUUGGGGGUUUUCCUU--UGGGGCUAAACACAUUUAUUUGUCAAAAAAUUUGAAUUCUUUUUUAUUUUAUAUGUACUUUUUAACAAUAUUCUUUGACUCU---UCCAA
..(((..((((....))))--..)))................((((((((((..(((....)))..)))))...(((........))).......)))))...---..... ( -14.00)
>consensus
UGUCUUGGGGGUUUUGCCUCUGAGGGC__________UAUUUGUCAAGCAAAUUGGAAUGUUU___AGUUUAUUAGUGCUUUUUAAUAAUAUUUUUUGGCUCCAAGGCC__
.(((((((((.....((((....)))).............(((..(((((.....((((........)))).....)))))..))).............)))))))))... (-13.43 = -15.43 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:27 2006