Locus 4705

Sequence ID 3L_DroMel_CAF1
Location 13,254,839 – 13,254,941
Length 102
Max. P 0.595785
window7420

overview

Window 0

Location 13,254,839 – 13,254,941
Length 102
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 82.51
Mean single sequence MFE -26.97
Consensus MFE -18.48
Energy contribution -18.95
Covariance contribution 0.47
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.69
SVM decision value 0.13
SVM RNA-class probability 0.595785
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13254839 102 - 23771897
UUACGGCCGCAACAAUGUGCGCCUUGUGAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGCGGCAACAGCAGC----------------
....((((((((((....((((.(((((((....))))))).....))))...((((.........)))))))))))))).....((((((....).)))))---------------- ( -37.50)
>DroVir_CAF1 6785 117 - 1
UUAUACCCGCAACAAUGUGCGCCUCGUAAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGCCGCAUAA-UAACCCCCUCCAGCCCACGG
......((((((((....((((...(((((....))))).......))))...((((.........))))))))))))...................-.................... ( -20.30)
>DroPse_CAF1 19663 108 - 1
UUAUGGCCAACACAAUGUGCGCCUUGUAAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGUGGCAACAACAACCC----------AAGA
...(((((...(((((((((...(((.....)))....(((((((((.((....)).))).))))))))))))))))))))....((((((....).)))))..----------.... ( -30.20)
>DroGri_CAF1 6995 111 - 1
UUAUACCCGCAACAAUGUGCGCCUCGUAAAACAAUUUAUAACUUUUGCGCUCUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGCCGCAGAA-UAGCC--CUCCAACCU----
......((((((((..(.((((...(((((....))))).......)))).).((((.........)))))))))))).......((((..((....-..)).--...))))..---- ( -23.30)
>DroMoj_CAF1 11636 93 - 1
UUAUACCCGCAACAAUGUGCGCCUCGUAAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGCCGC-------------------------
......((((((((....((((...(((((....))))).......))))...((((.........))))))))))))...............------------------------- ( -20.30)
>DroPer_CAF1 18597 108 - 1
UUAUGGCCAACACAAUGUGCGCCUUGUAAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGUGGCAACAACAACCC----------AAGA
...(((((...(((((((((...(((.....)))....(((((((((.((....)).))).))))))))))))))))))))....((((((....).)))))..----------.... ( -30.20)
>consensus
UUAUACCCGCAACAAUGUGCGCCUCGUAAAACAAUUUAUAACUUUUGCGCUUUUGCCUAAUAAGUUGGCAUGUUGUGGCCAAUAAGUUGCCGCAACA_CAACC_______________
((((..((((((((....((((...(((((....))))).......))))...((((.........))))))))))))...))))................................. (-18.48 = -18.95 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:19 2006