| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,234,411 – 13,234,511 |
| Length | 100 |
| Max. P | 0.599011 |
| Location | 13,234,411 – 13,234,511 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.14 |
| Mean single sequence MFE | -23.92 |
| Consensus MFE | -13.35 |
| Energy contribution | -14.13 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13234411 100 - 23771897 UUACUUUUGCCAGUCAUAUGUGAUUUGGGCUAAUUAUACCC---U--------------UACUAUUACCGCUAAGCCUCA-AAUGAGUUG-GGCUUAUCAGCGGAUUUCCAUUUCCUCC- ........(((.((((....))))...)))...........---.--------------........((((((((((.((-(.....)))-)))))...)))))...............- ( -22.00) >DroSec_CAF1 27803 101 - 1 UUACUUCUGCCAGUCAUAUGUGAUUUGGGCUAAUUAUACCC---U--------------UACUAUUACCGCUAAGCCUCA-AAUGAGUUGGGGCUUAUCAGCGGAUUUCCAUUUCCUCC- ........(((.((((....))))...)))...........---.--------------........(((((((((((((-(.....)))))))))...)))))...............- ( -26.10) >DroSim_CAF1 32743 101 - 1 UUACUUCUGCCAGUCAUAUGUGAUUUGGGCUAAUUAUACCC---U--------------UACUAUUACCGCUAAGCCUCA-AAUGAGUUGGGGCUUAUCAGCGGAUUUCCAUUUCCUCC- ........(((.((((....))))...)))...........---.--------------........(((((((((((((-(.....)))))))))...)))))...............- ( -26.10) >DroEre_CAF1 17295 91 - 1 UCAACUUGACCAGUCAUAUGUGACUUGGGCUAAUUAUGCCC---U------------------------GCUAAGCCUGA-AAUGAGUUG-GGCUUAUCAGCGGAUUUCCAUUUCCUACU ...........(((((....))))).((((.......))))---.------------------------((((((((..(-......)..-)))))...)))(((........))).... ( -24.80) >DroYak_CAF1 27879 103 - 1 UUACUUAUGCCAGUCAUAUGUGACUUGGGCUAAUUAUAGCC---UC------------UCACUAUUACCGCUAAGCCUCA-AAUGAGCUG-GGCUUAUCAGCGGAUUUCCAUUUCCUCCU ...................((((...((((((....)))))---).------------)))).....((((((((((.((-.......))-)))))...)))))................ ( -25.20) >DroAna_CAF1 114060 118 - 1 UUAUAUCUGCAAGUCAUAUGUGAUUUAGGCUAAUUUUCCCUACCUCCCUCCACCCCAAUCACUCGGAAUGCUAAUCCUGAAAAUGAGUUG-GGCUUAUGAACGGAUUUUCAUUUCCUUU- (((((..(.(((.((((..((((((..((.......................))..))))))((((.((....)).))))..)))).)))-.)..)))))..(((........)))...- ( -19.30) >consensus UUACUUCUGCCAGUCAUAUGUGAUUUGGGCUAAUUAUACCC___U______________UACUAUUACCGCUAAGCCUCA_AAUGAGUUG_GGCUUAUCAGCGGAUUUCCAUUUCCUCC_ ........((((((((....)))))..))).......................................((((((((.((........)).)))))...)))(((........))).... (-13.35 = -14.13 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:53 2006