Locus 4688

Sequence ID 3L_DroMel_CAF1
Location 13,228,166 – 13,228,264
Length 98
Max. P 0.909353
window7386

overview

Window 6

Location 13,228,166 – 13,228,264
Length 98
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 89.82
Mean single sequence MFE -22.11
Consensus MFE -16.82
Energy contribution -17.70
Covariance contribution 0.88
Combinations/Pair 1.04
Mean z-score -2.20
Structure conservation index 0.76
SVM decision value 1.06
SVM RNA-class probability 0.909353
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13228166 98 + 23771897
CACUGUUAAUUGUCAAAGAGUUUCGACUUUGCUGGUCUAACUUUU-UUCC--CUCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU
....((((((....((((((((..((((.....)))).)))))))-)...--......((((......((((((.....))))))..)))).))))))... ( -23.70)
>DroSec_CAF1 21533 100 + 1
CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGGCUUUU-UUCUCUCUCACUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU
....((((((.((.((((((..........((......)).....-..)))))).)).((((......((((((.....))))))..)))).))))))... ( -24.33)
>DroSim_CAF1 26490 98 + 1
CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU-UUCU--CUCACUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU
....((((((..(((((((((....))))).))))..........-....--......((((......((((((.....))))))..)))).))))))... ( -22.30)
>DroEre_CAF1 11124 98 + 1
CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU-UUCC--CCCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCAUAUUAACCUU
....((((((..(((((((((....))))).))))..........-....--.......(((......((((((.....))))))..)))..))))))... ( -21.20)
>DroYak_CAF1 21552 93 + 1
CCCUGUUAAUUGUCAGAGAGUUUCGAGUUUC------UGCCUUUUUUUUC--CCUAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCAUAUUAACCUU
....((((((.(.((((((.(....).))))------)).).........--.......(((......((((((.....))))))..)))..))))))... ( -19.00)
>consensus
CACUGUUAAUUGUCAGAGAGUUUCGACUUUCCUGAGCUGCCUUUU_UUCC__CUCAUUCGGCUUUCUUUUGGCCAAGUUGGCUAAUUGCCGUAUUAACCUU
....((((((..(((((((((....)))))).)))........................(((......((((((.....))))))..)))..))))))... (-16.82 = -17.70 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:47 2006