Locus 4683

Sequence ID 3L_DroMel_CAF1
Location 13,223,474 – 13,223,575
Length 101
Max. P 0.753148
window7378

overview

Window 8

Location 13,223,474 – 13,223,575
Length 101
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 83.98
Mean single sequence MFE -31.55
Consensus MFE -27.69
Energy contribution -27.50
Covariance contribution -0.19
Combinations/Pair 1.05
Mean z-score -1.60
Structure conservation index 0.88
SVM decision value 0.48
SVM RNA-class probability 0.753148
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13223474 101 - 23771897
----------U---AAUACACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUU-CAAUUUGUCA
----------.---.....((((((...((((((((.......)))))(((.(((((.......))))))))................))).))))))((((..-......)))) ( -29.00)
>DroSec_CAF1 16870 110 - 1
AACAAAAAAAG---AAUA-ACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGACUU-AUGAUUGUCA
...........---...(-((((((...((((((((.......)))))(((.(((((.......))))))))................))).)))))))(((..-......))). ( -32.30)
>DroYak_CAF1 16800 114 - 1
GACAAAAAAAUAUUAAUACAUCUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGACGCUGAUUC-UUGCGUGUCA
((((....................(((.((((((((.......)))))(((.(((((.......))))))))................))).)))(((......-..))))))). ( -34.90)
>DroAna_CAF1 104353 107 - 1
---AAAAAAAU---CAU--CCAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUCCAUGCCAGUCC
---.....(((---((.--.(((((...((((((((.......)))))(((.(((((.......))))))))................))).))))).)))))............ ( -30.00)
>consensus
___AAAAAAAU___AAUA_ACAUCUCCCCGACGGGGAAUUGAACCCCGGUCUCCCGCGUGACAGGCGGGGAUACUAACCACUAUACUAUCGAGGAUGUUGAUUC_AUGCUUGUCA
........................(((.((((((((.......)))))(((.(((((.......))))))))................))).)))....(((.........))). (-27.69 = -27.50 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:40 2006