Locus 4677

Sequence ID 3L_DroMel_CAF1
Location 13,219,256 – 13,219,357
Length 101
Max. P 0.785170
window7367

overview

Window 7

Location 13,219,256 – 13,219,357
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 86.20
Mean single sequence MFE -34.00
Consensus MFE -23.60
Energy contribution -24.35
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.69
SVM decision value 0.57
SVM RNA-class probability 0.785170
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13219256 101 + 23771897
AACAAUGGCAAUGGCAGUCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCAAUGGGCGGCGAUGGGUUGCGG
.............(((..(((.((.(((...((((((((.((((((..((((((.....))))))....))))))))))))))))).)).).))..))).. ( -37.30)
>DroSec_CAF1 12591 97 + 1
AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG----GGCGGGUUGCGG
.............(((((((.....((((.(((((((((.((((((..((((((.....))))))....))))))))))))))))----)))))))))).. ( -36.90)
>DroSim_CAF1 17690 97 + 1
AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG----GGCGGGUUGCGG
.............(((((((.....((((.(((((((((.((((((..((((((.....))))))....))))))))))))))))----)))))))))).. ( -36.90)
>DroEre_CAF1 2528 89 + 1
AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGGAAAUCCACCAAGGGGUUAAGGUGGCUUCAGUGGGCGCACUU-GAGA-----------GGGGGCG
..(((((((((((.((....)).))..)))))))))....(((((...((((((.....)))))).)))))(((.(((-....-----------))).))) ( -24.90)
>consensus
AACAAUGGCAAUGGCAACCCUGGCAGCUUGUUAUUGAAAAUCCACCAAGGGGUUAAGGUGGCUUCGGUGGGUGGAUUUCGAUGGG____GGCGGGUUGCGG
..(((((((((((.((....)).))..))))))))).(((((((((..((((((.....))))))....)))))))))....................... (-23.60 = -24.35 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:30:30 2006