Locus 466

Sequence ID 3L_DroMel_CAF1
Location 1,338,619 – 1,338,737
Length 118
Max. P 0.630331
window687

overview

Window 7

Location 1,338,619 – 1,338,737
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.47
Mean single sequence MFE -32.40
Consensus MFE -23.88
Energy contribution -24.80
Covariance contribution 0.92
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.74
SVM decision value 0.20
SVM RNA-class probability 0.630331
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1338619 118 - 23771897
AACGGAAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUUCUGCAGAAAGAAGAAAUUGAGUUGAA--CGCGUUAUUGGGGGAAACUAAAACAAGAAAGUGUCACACUCAAA
.....(((.((.(....)((((....)))).......)).)))..(((((......)))))...(((((((((.--(((....(((.((....))....)))....)))))).)))))). ( -27.90)
>DroSec_CAF1 10832 118 - 1
AACGGAAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUUCUCCAAAGAGGAGAAAUCGAGUUGAA--UGCGUUAUCGGGGGAAACUAAAACAAGAAAGUGUCACACUCAGA
...((....))..(((((((((....))))........(..(((((((((((...((.((....))..((....--.))....)).)))))))))))..)......)))))......... ( -33.10)
>DroSim_CAF1 10924 118 - 1
AACGGAAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUUCUCCAAAGAGGAGAAAUCGAGUUGGA--UGCGUUAUCGGGGGAAACUAAAACAAGAAAGUGUCACACUCAGA
...((....))..(((((((((....))))........(..(((((((((((...((......(((......))--)......)).)))))))))))..)......)))))......... ( -33.70)
>DroEre_CAF1 11200 120 - 1
AACGGGAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUGCUCCAGGAAGGAGAAAUCGAGUGGAAAUCGAGGUAGUGUAGGAAACUAAAACUAGAGAGUGUCACACCCAAA
...(((.((....(((((((((....))))...........((((((.((((.....))))...((((.......)))).......(((....))).))))))...))))).)))))... ( -33.90)
>DroYak_CAF1 11724 118 - 1
CACGGAAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUUCUCCAGGAAGCAGAAGUCGCGUUCAA--CUAGGCAUUGGGGGAAACUAAAACAAGAAAGUGUCACACCCAAA
.....((((((.((....((((....))))..(((.((.((((.(((((.....)))))...)))).)))))..--)).))))))(((.((.(((..........))).))...)))... ( -33.40)
>consensus
AACGGAAUGCCAGGACACGUGCUGCGGCACAAGAAUCGGGAUUAGUUUCUCCAGAAAGGAGAAAUCGAGUUGAA__CGCGUUAUUGGGGGAAACUAAAACAAGAAAGUGUCACACUCAAA
...((....))..(((((((((....))))........(..(((((((((((......((....))............((....)))))))))))))..)......)))))......... (-23.88 = -24.80 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:37 2006