Locus 4645

Sequence ID 3L_DroMel_CAF1
Location 13,184,523 – 13,184,618
Length 95
Max. P 0.930752
window7299

overview

Window 9

Location 13,184,523 – 13,184,618
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 95.77
Mean single sequence MFE -21.50
Consensus MFE -20.97
Energy contribution -20.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.98
SVM decision value 1.21
SVM RNA-class probability 0.930752
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13184523 95 - 23771897
UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAACCAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU
.(((((..((((..(((....)))............(((....)))(((..(((....(.((....)).).)))...)))..))))..))))).. ( -21.40)
>DroSim_CAF1 34312 94 - 1
UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAA-CAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU
.(((((..((((..(((....))).........-..(((....)))(((..(((....(.((....)).).)))...)))..))))..))))).. ( -21.40)
>DroEre_CAF1 39549 93 - 1
UAUUUUUUAGGGAUAGCUGUUGCUUUU-UUUAA-CAGGGGUGACCCGCAUUGAUUUUUAGGAUUUUUCGCCGUCUUUUGCAGCCCUUUAAAGUUU
.(((((..((((..(((....)))...-.....-..(((....)))(((..(((.....((........)))))...)))..))))..))))).. ( -21.70)
>consensus
UAUUUUUUAGGGAUAGCUGUUGCUUCUUUUUAA_CAGGGGUGACCCGCAUUGAUUUUUGUGAUUUUUCUCCGUCUUUUGCAGCCCUUUAAAGUUU
.(((((..((((..(((....)))............(((....)))(((..(((......((....))...)))...)))..))))..))))).. (-20.97 = -20.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:26 2006