Locus 4636

Sequence ID 3L_DroMel_CAF1
Location 13,174,301 – 13,174,392
Length 91
Max. P 0.999262
window7277

overview

Window 7

Location 13,174,301 – 13,174,392
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 98.46
Mean single sequence MFE -23.80
Consensus MFE -23.32
Energy contribution -23.36
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -2.30
Structure conservation index 0.98
SVM decision value 3.47
SVM RNA-class probability 0.999262
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13174301 91 + 23771897
UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54)
>DroSec_CAF1 25822 91 + 1
UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54)
>DroSim_CAF1 24006 91 + 1
UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). ( -24.54)
>DroEre_CAF1 29709 91 + 1
UUUCCAACCCUCGACUUUUGCUUUUUGGCAGUGCUGUCCAUUAGUCACGCGCCAUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((..((.((....(((((((((((.....))).)))(((((.......))))))))))......))....))..)))). ( -21.30)
>DroYak_CAF1 24727 91 + 1
UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCAUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((...((((....((((.((((((.....))).)))..))))...(((((((....))))))).....))))..)))). ( -24.10)
>consensus
UUUCCAACCCUCGACUUUUGGUUUUUGGCAGUGCUAUCCAUUAGUCACGCGCCGUAUCAAGGUGCUGCCAUCUUGUGUUCCCAAUUUCGAC
..........((((...((((....(((((((((((.....))).)))(((((.......))))))))))..........))))..)))). (-23.32 = -23.36 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:06 2006