Locus 4633

Sequence ID 3L_DroMel_CAF1
Location 13,171,714 – 13,171,826
Length 112
Max. P 0.937129
window7273

overview

Window 3

Location 13,171,714 – 13,171,826
Length 112
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 94.62
Mean single sequence MFE -23.28
Consensus MFE -22.02
Energy contribution -21.86
Covariance contribution -0.16
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.95
SVM decision value 1.26
SVM RNA-class probability 0.937129
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13171714 112 + 23771897
--CAAAAUGAAUUUUUCCAGUGUACACCAGGGGUUGGUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
--......((((......((((((...(((((..((..((((.(((......)))))))..))..))))).......((....))...........)))))).....))))... ( -20.80)
>DroSec_CAF1 23304 112 + 1
--CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
--.....((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -24.20)
>DroSim_CAF1 21466 112 + 1
--CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
--.....((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -24.20)
>DroEre_CAF1 26359 114 + 1
CACAACUUGGGUUUUUCCAGUGUAAACCGGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
.......((((....))))(((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))............. ( -22.40)
>DroYak_CAF1 22053 114 + 1
CACAACAUAGAUUUUUGCAGUGUAGGCCAGGGGUUGUUUGGGCGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
......(((((....((.((((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))))).....))))) ( -24.80)
>consensus
__CAAAAUGGAUUUUUCCAGUGUAAACCAGGGGUUGUUUGGGUGGUUCACACACCCCCAUUCGUGCCUUGUUUCAUCGAUAUUUCUUUUUUCAAUUUAUGCUCAUUUAUUCUAU
......(((((.......((((((((.(((((..((..((((.(((......)))))))..))..))))).......((....)).........)))))))).......))))) (-22.02 = -21.86 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:29:02 2006