Locus 4626

Sequence ID 3L_DroMel_CAF1
Location 13,162,502 – 13,162,616
Length 114
Max. P 0.576862
window7263

overview

Window 3

Location 13,162,502 – 13,162,616
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 85.65
Mean single sequence MFE -22.56
Consensus MFE -16.78
Energy contribution -17.66
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.74
SVM decision value 0.09
SVM RNA-class probability 0.576862
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13162502 114 - 23771897
AAUAUCAAGCGAGACAAUGGCGUCUUGAGCUAAGAAAAGUAUAAAAGGUUUCUAUGAAAGGAGAGAUUUAUUGAAAGCCUUGCAAAUUAAAGAGGGGAUGACCAUU------UGAUAUUA
(((((((((((((.(..((((.......)))).........(((.((((((((.(....).)))))))).)))...).)))))..........((......))..)------))))))). ( -23.70)
>DroSec_CAF1 14071 114 - 1
AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUGCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUUAAGAGGGGAUGACCUGA------GGAUAUGA
.(((((..(((((((..((((.......))))...........(((..(((.(......).)))..))).......))))))).........(((......)))..------.))))).. ( -22.20)
>DroSim_CAF1 12307 114 - 1
AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUGCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUAAAGAGGGGAUGACCAUA------AGAUAUUA
((((((..(.....).(((((((((((.(((......)))......((((((((.((.....((......)).....)).)))))))).....))))))).)))).------.)))))). ( -23.50)
>DroEre_CAF1 17431 114 - 1
AAUAUCAAGCGAAACAAAGGCAUAGUCAGCUGAGAAAAGCAUAAAAGGUUUUCCUGAAAGGACAGAUUUAAUGAAGGACUUGCAAAUGAAUGAGGGGAUGACCAGA------GGAUAUUA
((((((...(....((...(((.((((.(((......))).....(((((((((.....))).)))))).......)))))))...)).....((......)).).------.)))))). ( -22.10)
>DroYak_CAF1 12572 120 - 1
AAUAUCAAGCGAAACAAAGGCAUAUUCAGCCACGGAAAGUAUAAAAGGUUUCCAUGAAAGAAGAGAUUCAUUGAAGGUCUUGUAAACUGAAGAGGGGAUGACCAGAGGAAGAGGAUAUUA
((((((.......((((.(((...(((((.((.(((((.(......).))))).))...(((....))).))))).)))))))...((......((.....))......))..)))))). ( -21.30)
>consensus
AAUAUCAAGCGAGACAAUGGCGUCUUCAGCUAAGAAAAGUAUAAAAGGUUUCCAUGAAAGGAGAGAUUUAUUGAAGGUCUUGCAAAUUAAAGAGGGGAUGACCAGA______GGAUAUUA
((((((..(((((((...(((.......))).................((((.(((((........))))).)))))))))))..........((......))..........)))))). (-16.78 = -17.66 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:53 2006