Locus 4612

Sequence ID 3L_DroMel_CAF1
Location 13,146,346 – 13,146,465
Length 119
Max. P 0.748166
window7237

overview

Window 7

Location 13,146,346 – 13,146,465
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 95.68
Mean single sequence MFE -34.17
Consensus MFE -29.80
Energy contribution -30.05
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.87
SVM decision value 0.47
SVM RNA-class probability 0.748166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13146346 119 - 23771897
UGUCGGCCACUUUUGGUCGCAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAC-GCAGAGGCAGCAGAGAGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG
..............((((((((((((((((.((((((((((((.....(((((..(......)..)))))...-((....)).)))..)))))))))......)))))))))))))))). ( -37.40)
>DroSec_CAF1 134045 119 - 1
UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU-CCAGAGGCAGCAGAGCGGCCAGAAAAUUAUGAAAUAUUUGUGGACG
.((((((((....)))))..((((((((((.((((((((((((..(((((....)))))..((((((....))-)))).....)))))..)))))))......))))))))))...))). ( -31.80)
>DroSim_CAF1 133941 119 - 1
UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU-CCAGAGGCAGCAGAGCGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG
...(((((((.((((((((....((((((((....((((.(.((((((((....)))))..))).).))))..-))))).)))......))))))))((((........))))))))))) ( -35.40)
>DroYak_CAF1 135524 120 - 1
UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAUCCCAGAGGCAGCAGAAAGGCCAGAAAAUUAUGAAAUAUUUGUGCCAA
..(((((((....)))))))((((((((((.((((((((((((..(((((....)))))..(((((.......))))).....)))))..)))))))......))))))))))....... ( -32.10)
>consensus
UGUCGGCCACUUUUGGUCGAAAAUGUUUUGGUUUGGCUUUUGCAAAAAUUCACAAAUUUAAUUGGGUGAGCAU_CCAGAGGCAGCAGAGAGGCCAGAAAAUUAUGAAAUAUUUGUGGCCG
..(((((((....)))))))((((((((((.((((((((((((......((((..(......)..))))((.........)).)))))..)))))))......))))))))))....... (-29.80 = -30.05 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:28 2006