Locus 4602

Sequence ID 3L_DroMel_CAF1
Location 13,139,965 – 13,140,085
Length 120
Max. P 0.812834
window7217

overview

Window 7

Location 13,139,965 – 13,140,085
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.58
Mean single sequence MFE -32.15
Consensus MFE -28.26
Energy contribution -28.96
Covariance contribution 0.70
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 0.88
SVM decision value 0.65
SVM RNA-class probability 0.812834
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13139965 120 + 23771897
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUGUAUGCUGAUGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUGGGAAAAAUUGUUUACUUCGCAUUCAAAAC
((((((((......)))))))).((((.((((((((....)))))(((((((..........(((.((....)).))))))))))..))).))))......................... ( -28.40)
>DroSec_CAF1 127678 120 + 1
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUUUUGAUUUUGCAUUCAAAAC
((((((((......)))))))).(((((((((((((....))))).((((((..........(((.((....)).)))))))))...))))))))....((((((........)))))). ( -34.40)
>DroSim_CAF1 127603 120 + 1
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGAUUUCGCAUUCAAAAC
((((((((......)))))))).(((((((((((((....))))).((((((..........(((.((....)).)))))))))...))))))))......((((........))))... ( -32.90)
>DroEre_CAF1 124582 120 + 1
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACAGCAAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUCUUGAUUUUGCAUUUAAGGC
((((((((......)))))))).(((((((((((((....))))).((.((((.....((.((((........)))).)))))).))))))))))....((((((........)))))). ( -36.10)
>DroYak_CAF1 129008 120 + 1
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCACUUUAUGCUGACGCCGCCAAAACUCCGACACCAAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGCUUUUGCAUUCAAAGC
((((((((......)))))))).((((((((((((.....).))).((((((...((..................)).))))))...))))))))...(((.(((....)))..)))... ( -28.97)
>consensus
UGGCUUUUAAUUAAAAAGGUCACUUUCGAGUUCAGUUUAUGCUGACGCCGCCAAAACUCCGACACCGAUGAUUCUGUGGGUGGCAGCACUCGGAAAAAUUGUUGAUUUUGCAUUCAAAAC
((((((((......)))))))).(((((((((((((....))))).((((((...((.....((....)).....)).))))))...))))))))......................... (-28.26 = -28.96 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:28:08 2006