Locus 4591

Sequence ID 3L_DroMel_CAF1
Location 13,134,127 – 13,134,232
Length 105
Max. P 0.637562
window7194

overview

Window 4

Location 13,134,127 – 13,134,232
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.15
Mean single sequence MFE -30.54
Consensus MFE -24.42
Energy contribution -24.54
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value 0.21
SVM RNA-class probability 0.637562
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13134127 105 - 23771897
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCACAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUAGG---------------ACCACAUGGCAAAGUCAGAGCAGUGACUCGCU
..(((((((((((...((((.(((.......))).))))..))))....((((((((((.(.((....)).).---------------))))))))))......)).)))))........ ( -30.30)
>DroSec_CAF1 121949 99 - 1
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGG----------------GCCACAUGGCAAAGUCAGA-----GACUCGCU
.....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..----------------))))))))))..((((...-----)))).)). ( -32.00)
>DroSim_CAF1 120204 99 - 1
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGG----------------GCCACAUGGCAAAGUCAGA-----GACUCGCU
.....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..----------------))))))))))..((((...-----)))).)). ( -32.00)
>DroEre_CAF1 118888 106 - 1
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGG---------CACAUGGCCACAUGGGAAAGUCAGA-----GACUCGCC
....(((((((((...((((.((((.....)))).))))..))))....(((.((.....))..)))...)))---------))((((....))))((..((((...-----))))..)) ( -28.40)
>DroYak_CAF1 122973 115 - 1
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGGGCCCACGGCCACAUUGCUACAUGGAAAAGUUAGA-----GACUCGCU
.....((.(((((...((((.((((.....)))).))))..)))))....(((((((((((.((....)).)((((...))))....))))))))))..........-----.....)). ( -30.00)
>consensus
AAAUUGCCUGUGCAUGUAUUUAUGCUGAUCGCAUUAAUAACGCGCAUACGUCAUGUGGUACAAGGACACUGGG_______________GCCACAUGGCAAAGUCAGA_____GACUCGCU
.....((.(((((...((((.((((.....)))).))))..)))))...((((((((((...((....))..................))))))))))..((((........)))).)). (-24.42 = -24.54 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:45 2006