Locus 4583

Sequence ID 3L_DroMel_CAF1
Location 13,126,925 – 13,127,045
Length 120
Max. P 0.553395
window7179

overview

Window 9

Location 13,126,925 – 13,127,045
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.50
Mean single sequence MFE -27.15
Consensus MFE -22.00
Energy contribution -21.80
Covariance contribution -0.20
Combinations/Pair 1.08
Mean z-score -1.51
Structure conservation index 0.81
SVM decision value 0.04
SVM RNA-class probability 0.553395
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13126925 120 - 23771897
UUAGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCAGAGCUGCGCGAGAAAAUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUCG
...(((.(.(((((((((........))).......)))))).))))(((((.........(((((((..((.....))..)))))))..((.....))..........)))))...... ( -24.71)
>DroSec_CAF1 114771 120 - 1
UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGAGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUGCCAUCG
..((((...(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))).... ( -29.00)
>DroSim_CAF1 113015 120 - 1
UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUGCCAUCG
..((((...(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))).... ( -29.00)
>DroEre_CAF1 111719 120 - 1
UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCGUUG
.(((.((..(((((((((........))))(((((((((.......)))))))))......(((((((..((.....))..)))))))................)))))...)))))... ( -26.90)
>DroYak_CAF1 115067 120 - 1
UCAGCUAACGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUUU
.(((((......((((((........)))))).......)))))...((((..........(((((((..((.....))..)))))))..((.....)).............)))).... ( -26.12)
>consensus
UCGGCGACCGCUUUGUGCUAUUUACCGCAUAAUUUUCCGAGCUGCGCGGGAAAUUUUCCAUUGCAGUUUCACUUAACGUACAACUGCACACAUAAUUUGAUUAAAAAGCUUCUCCCAUCG
.((((.......((((((........))))))........)))).((((((....))))..(((((((..((.....))..)))))))...................))........... (-22.00 = -21.80 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:30 2006