Locus 4567

Sequence ID 3L_DroMel_CAF1
Location 13,118,567 – 13,118,678
Length 111
Max. P 0.999732
window7138

overview

Window 8

Location 13,118,567 – 13,118,678
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.02
Mean single sequence MFE -38.08
Consensus MFE -33.56
Energy contribution -33.76
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.77
Structure conservation index 0.88
SVM decision value 3.97
SVM RNA-class probability 0.999732
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13118567 111 - 23771897
GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00)
>DroSec_CAF1 106414 111 - 1
GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00)
>DroSim_CAF1 104535 111 - 1
GGGUCU----G-----GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((.----.-----((((((.((((((......((.....))(((((.(((........))).)))))....))))))((......)))))))))))))................... ( -37.00)
>DroEre_CAF1 102918 119 - 1
GGGUCUGGCUGCUCUGGUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCAC-GAAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((.(...(((((..(.(.((((((((......((.....))(((((.(((........))).)))))....)))))))))-.)..)))))..))))))................... ( -42.00)
>DroYak_CAF1 106605 115 - 1
GGGUCUGUCUGC-----UGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCUCCAAAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((.((((..-----(((..(((((((......((.....))(((((.(((........))).)))))....))))))).)))....))))...)))))................... ( -37.40)
>consensus
GGGUCU____G_____GUGGCUGGCAGCCAUAAAAGAGUGCAUCAAAUGGGAUUUUAAGUUGUCGCAUUUAACAGGCUGCCCGGGGAAGGGGCUACGACCCAACAAAACUACAAAUAGAU
(((((...........(((((((((((((......((.....))(((((.(((........))).)))))....))))))).........)))))))))))................... (-33.56 = -33.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:50 2006