Locus 4546

Sequence ID 3L_DroMel_CAF1
Location 13,082,894 – 13,082,998
Length 104
Max. P 0.775905
window7099

overview

Window 9

Location 13,082,894 – 13,082,998
Length 104
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 94.20
Mean single sequence MFE -31.42
Consensus MFE -26.93
Energy contribution -26.96
Covariance contribution 0.03
Combinations/Pair 1.03
Mean z-score -1.74
Structure conservation index 0.86
SVM decision value 0.54
SVM RNA-class probability 0.775905
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13082894 104 - 23771897
UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG
.....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60)
>DroSec_CAF1 70546 104 - 1
UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG
.....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60)
>DroSim_CAF1 66027 104 - 1
UAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG
.....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60)
>DroEre_CAF1 67242 104 - 1
CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG
.....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60)
>DroYak_CAF1 69644 104 - 1
CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU------------GGACUUGCACUUCGGCGUG
.....((((((((.....))))))))...(((((.(((((((.(.(((((....)))))).)))...(((((...))))))))))------------))))..((.(....).)). ( -31.60)
>DroAna_CAF1 65081 116 - 1
CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCAGGCAAAUUAUAAUUUAUGAAGUCUCUGAUAUCAGGUUGGCUUGCACUUUGCCGUG
....((((((....)))))).(.(((((((((((((((((((.(.(((((....)))))).)))...(((((...)))))))))((((....))))))))...)))))))).)... ( -30.50)
>consensus
CAAGAUUGAUUAUAAUCGGUAGUCAAAGUGUCCAAGACUGCUGGCGGCUAUUUAUGGCCCGGGCAAAUUAUAAUUUAUGAAGUCU____________GGACUUGCACUUCGGCGUG
....((((((....)))))).(((.((((((.......((((.(.(((((....)))))).))))..............(((((..............))))))))))).)))... (-26.93 = -26.96 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:11 2006