Locus 4544

Sequence ID 3L_DroMel_CAF1
Location 13,080,376 – 13,080,496
Length 120
Max. P 0.934169
window7097

overview

Window 7

Location 13,080,376 – 13,080,496
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.67
Mean single sequence MFE -24.63
Consensus MFE -21.28
Energy contribution -21.84
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.86
SVM decision value 1.23
SVM RNA-class probability 0.934169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13080376 120 - 23771897
CAUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAAUCACAAAACUCA
...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((((....))))...)))).)))).................. ( -25.30)
>DroSec_CAF1 67967 120 - 1
CUUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAACUCACAGCGAAUUCAUUUCAACCACAAAACUCA
...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((........))...)))).)))).................. ( -23.50)
>DroSim_CAF1 63459 120 - 1
CAUUGAGAUCGCUUGAUUGGAAGAUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUGCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAACCACAAAACUCA
...((((.((((((((((((.(((((.....)))))...((((..(((.......))).))))...))))))))....((((....))))...)))).)))).................. ( -26.60)
>DroEre_CAF1 64698 120 - 1
CAUUGAGAUUGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUUCAGCCAAUCAAAAACGAAUUAAAAUUCACUGCGAAUUCAUUUCAGUCACAAAACUCA
...((((.((...((((((((((((....))).....(((((((.(((.......)))....................((((....))))))))))).....)))))))))..)).)))) ( -23.90)
>DroYak_CAF1 67013 119 - 1
CCUUGAGAUUGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUACCAGCCAAUCCAAAACGUAUUAAAAUUCACAGCGAAUUCAUUUCCAGCACA-AACUCA
...((((..((((.((.((((.(((((.((((.((((.(((.((.((((....................))))...))))).)))))))))))))...))))..)).))))..-..)))) ( -23.85)
>consensus
CAUUGAGAUCGCUUGAUUGGAAGCUGUUGAGUAUUUAUUGCAGUCGGAUAAUCUUUCCUCUUCCAGCCAAUCAAAAACGAAUUAAAAUUCACAGCGAAUUCAUUUCAACCACAAAACUCA
...((((.((((((((((((..(((((............))))).(((.......)))........))))))))....((((....))))...)))).)))).................. (-21.28 = -21.84 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:09 2006