Locus 4539

Sequence ID 3L_DroMel_CAF1
Location 13,059,905 – 13,060,008
Length 103
Max. P 0.814909
window7086

overview

Window 6

Location 13,059,905 – 13,060,008
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 93.42
Mean single sequence MFE -23.14
Consensus MFE -18.28
Energy contribution -18.52
Covariance contribution 0.24
Combinations/Pair 1.20
Mean z-score -1.82
Structure conservation index 0.79
SVM decision value 0.66
SVM RNA-class probability 0.814909
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13059905 103 + 23771897
AUCCCCAAAAACAAAUUGUUAAAAAGAUUAUGUCAUGCCGAAGGAAAAAUAAAGGAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUGCGCUCUCUG-CCAUC
.(((.....(((.....))).....(((...)))........))).......(((((((((((((((......)))))))))))))))(.((.....)-))... ( -19.10)
>DroSec_CAF1 47602 103 + 1
AUCGCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAGGAAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUUCGCUCUCUG-GCAUC
..................................((((((((((.......((((((((((((((((......))))))))))))))))...))))))-)))). ( -30.20)
>DroSim_CAF1 43402 103 + 1
AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGAAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUUCGCUUUCUG-GCAUC
..................................((((((((((.......((((((((((((((((......))))))))))))))))...))))))-)))). ( -28.10)
>DroEre_CAF1 44356 101 + 1
AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUA-GGGAA-AAAACGAGAGGAAAAUGUUGUUUUCUUUUUGCGCUCUUUG-GCAUC
..................................((((((((((.....((-((((.-(((((((.(......).))))))).))))))...))))))-)))). ( -18.10)
>DroYak_CAF1 46159 103 + 1
AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGGAA-AAAACGAGAGGAAAAUGUUGUUUUCUUUUUGCGCUCUUUGGGCAUC
..................................(((((.(((((.....(((((((-(..((((.(......).)))))))))))).....))))).))))). ( -20.20)
>consensus
AUCCCCAAAUACAAAUUGUUAAAAAGAUUAUGUCGUGCCGGAGGAAAAAUAAAGGAAGAAAACGAGAGGAAAAUCUUGUUUUCUUUUUGCGCUCUCUG_GCAUC
..................................((((((((((........(((((((((((((((......)))))))))))))))....)))))).)))). (-18.28 = -18.52 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:59 2006