| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,011,303 – 13,011,395 |
| Length | 92 |
| Max. P | 0.739152 |
| Location | 13,011,303 – 13,011,395 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.26 |
| Mean single sequence MFE | -16.86 |
| Consensus MFE | -11.51 |
| Energy contribution | -11.88 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.739152 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13011303 92 + 23771897 UUU-UUUUAAAUGGAAUAUCCUGCAAAUAUGUUUAUUUUUCACCCCGCCCCCCCGCAAAA--------UCAAAUAGGGCACCAAUCAGCAGCAGGACACGC ...-..............(((((((((((....)))))........((((..........--------.......))))...........))))))..... ( -16.43) >DroSec_CAF1 2328 92 + 1 UUUUUUUUAAAUGGAAUAUCCUGCAAAUAUGUUUAUUUUUCACCCCGCCC-CCCGCAAAA--------UCAAAUAGGGCACCAACCAGCAGCAGGACACGC ..................(((((((((((....)))))........((((-.........--------.......))))...........))))))..... ( -16.49) >DroSim_CAF1 2344 90 + 1 UUU-UUUUAAAUGGAAUAUCCUGCAAAUAUCUUUAUUUUUAACCACGCCC--CCGAAAAA--------UCAAAUAGGGCACCAACCAGCAGCAGGACACGC ...-..............(((((((((((....)))))........((((--........--------.......))))...........))))))..... ( -16.56) >DroYak_CAF1 2347 94 + 1 -----UCUUCUUGUAAUGUCCUGCCAAUGUGCUUACUACCCCCUC-UCUC-UCUACAAAAAAAAAAAAAAAUAUAGGGCACCAACCAGCAGCAGGACACGC -----...........((((((((.....((((.......((((.-....-.......................))))........))))))))))))... ( -17.95) >consensus UUU_UUUUAAAUGGAAUAUCCUGCAAAUAUGUUUAUUUUUCACCCCGCCC_CCCGCAAAA________UCAAAUAGGGCACCAACCAGCAGCAGGACACGC ..................(((((((((((....)))))........((((.........................))))...........))))))..... (-11.51 = -11.88 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:31 2006